Literature DB >> 19360018

A general protocol for the crystallization of membrane proteins for X-ray structural investigation.

Zachary E R Newby1, Joseph D O'Connell, Franz Gruswitz, Franklin A Hays, William E C Harries, Ian M Harwood, Joseph D Ho, John K Lee, David F Savage, Larry J W Miercke, Robert M Stroud.   

Abstract

Protein crystallography is used to generate atomic resolution structures of protein molecules. These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other proteins. This technique can be applied to membrane proteins resident in the membranes of cells. To accomplish this, membrane proteins first need to be either heterologously expressed or purified from a native source. The protein has to be extracted from the lipid membrane with a mild detergent and purified to a stable, homogeneous population that may then be crystallized. Protein crystals are then used for X-ray diffraction to yield atomic resolution structures of the desired membrane protein target. Below, we present a general protocol for the growth of diffraction quality membrane protein crystals. The process of protein crystallization is highly variable, and obtaining diffraction quality crystals can require weeks to months or even years in some cases.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19360018      PMCID: PMC4075773          DOI: 10.1038/nprot.2009.27

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  77 in total

1.  NMR structure determination of a membrane protein with two transmembrane helices in micelles: MerF of the bacterial mercury detoxification system.

Authors:  Stanley C Howell; Michael F Mesleh; Stanley J Opella
Journal:  Biochemistry       Date:  2005-04-05       Impact factor: 3.162

Review 2.  Ion-channel reconstitution.

Authors:  Francisco J Morera; Guillermo Vargas; Carlos González; Eduardo Rosenmann; Ramon Latorre
Journal:  Methods Mol Biol       Date:  2007

3.  Small-angle X-ray scattering from RNA, proteins, and protein complexes.

Authors:  Jan Lipfert; Sebastian Doniach
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

4.  Fast, reproducible size-exclusion chromatography of biological macromolecules.

Authors:  R D Ricker; L A Sandoval
Journal:  J Chromatogr A       Date:  1996-08-30       Impact factor: 4.759

Review 5.  Radioligand binding methods: practical guide and tips.

Authors:  D B Bylund; M L Toews
Journal:  Am J Physiol       Date:  1993-11

Review 6.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels.

Authors:  B Miroux; J E Walker
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

Review 7.  Strategies for achieving high-level expression of genes in Escherichia coli.

Authors:  S C Makrides
Journal:  Microbiol Rev       Date:  1996-09

8.  Structure of acid-sensing ion channel 1 at 1.9 A resolution and low pH.

Authors:  Jayasankar Jasti; Hiroyasu Furukawa; Eric B Gonzales; Eric Gouaux
Journal:  Nature       Date:  2007-09-20       Impact factor: 49.962

9.  Crystal structure of inhibitor-bound human 5-lipoxygenase-activating protein.

Authors:  Andrew D Ferguson; Brian M McKeever; Shihua Xu; Douglas Wisniewski; Douglas K Miller; Ting-Ting Yamin; Robert H Spencer; Lin Chu; Feroze Ujjainwalla; Barry R Cunningham; Jilly F Evans; Joseph W Becker
Journal:  Science       Date:  2007-06-28       Impact factor: 47.728

Review 10.  Recombinant protein expression in Pichia pastoris.

Authors:  J M Cregg; J L Cereghino; J Shi; D R Higgins
Journal:  Mol Biotechnol       Date:  2000-09       Impact factor: 2.860

View more
  37 in total

1.  Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals.

Authors:  Giovanni Gonzalez-Gutierrez; Tiit Lukk; Vinayak Agarwal; David Papke; Satish K Nair; Claudio Grosman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Overexpressing human membrane proteins in stably transfected and clonal human embryonic kidney 293S cells.

Authors:  Sarika Chaudhary; John E Pak; Franz Gruswitz; Vinay Sharma; Robert M Stroud
Journal:  Nat Protoc       Date:  2012-02-09       Impact factor: 13.491

3.  Dodecyl maltopyranoside enabled purification of active human GABA type A receptors for deep and direct proteomic sequencing.

Authors:  Xi Zhang; Keith W Miller
Journal:  Mol Cell Proteomics       Date:  2014-12-03       Impact factor: 5.911

4.  Porous nucleating agents for protein crystallization.

Authors:  Sahir Khurshid; Emmanuel Saridakis; Lata Govada; Naomi E Chayen
Journal:  Nat Protoc       Date:  2014-06-12       Impact factor: 13.491

Review 5.  Bacterial phosphoglycosyl transferases: initiators of glycan biosynthesis at the membrane interface.

Authors:  Vinita Lukose; Marthe T C Walvoort; Barbara Imperiali
Journal:  Glycobiology       Date:  2017-09-01       Impact factor: 4.313

Review 6.  Crystallization chaperone strategies for membrane proteins.

Authors:  Raquel L Lieberman; Jeffrey A Culver; Kevin C Entzminger; Jennifer C Pai; Jennifer A Maynard
Journal:  Methods       Date:  2011-08-11       Impact factor: 3.608

7.  A general protocol for the generation of Nanobodies for structural biology.

Authors:  Els Pardon; Toon Laeremans; Sarah Triest; Søren G F Rasmussen; Alexandre Wohlkönig; Armin Ruf; Serge Muyldermans; Wim G J Hol; Brian K Kobilka; Jan Steyaert
Journal:  Nat Protoc       Date:  2014-02-27       Impact factor: 13.491

8.  Large-scale identification of membrane proteins with properties favorable for crystallization.

Authors:  Jared Kim; Allison Kagawa; Kellie Kurasaki; Niloufar Ataie; Il Kyu Cho; Qing X Li; Ho Leung Ng
Journal:  Protein Sci       Date:  2015-08-27       Impact factor: 6.725

Review 9.  Tetra detector analysis of membrane proteins.

Authors:  Larry J W Miercke; Rebecca A Robbins; Robert M Stroud
Journal:  Curr Protoc Protein Sci       Date:  2014-08-01

10.  Biomolecular membrane protein crystallization.

Authors:  Jani Reddy Bolla; Chih-Chia Su; Edward W Yu
Journal:  Philos Mag (Abingdon)       Date:  2012-07-01       Impact factor: 1.864

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.