Literature DB >> 24922271

Porous nucleating agents for protein crystallization.

Sahir Khurshid1, Emmanuel Saridakis2, Lata Govada1, Naomi E Chayen1.   

Abstract

Solving the structure of proteins is pivotal to achieving success in rational drug design and in other biotechnological endeavors. The most powerful method for determining the structure of proteins is X-ray crystallography, which relies on the availability of high-quality crystals. However, obtaining such crystals is a major hurdle. Nucleation is the crucial prerequisite step, which requires overcoming an energy barrier. The presence in a protein solution of a nucleant, a solid or a semiliquid substance that facilitates overcoming that barrier allows crystals to grow under ideal conditions, paving the way for the formation of high-quality crystals. The use of nucleants provides a unique means for optimizing the diffraction quality of crystals, as well as for discovering new crystallization conditions. We present a protocol for controlling the nucleation of protein crystals that is applicable to a wide variety of nucleation-inducing substances. Setting up crystallization trials using these nucleating agents takes an additional few seconds compared with conventional setup, and it can accelerate crystallization, which typically takes several days to months.

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Year:  2014        PMID: 24922271     DOI: 10.1038/nprot.2014.109

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  40 in total

1.  Improving protein crystal quality by decoupling nucleation and growth in vapor diffusion.

Authors:  E Saridakis; N E Chayen
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

2.  Porous silicon: an effective nucleation-inducing material for protein crystallization.

Authors:  N E Chayen; E Saridakis; R El-Bahar; Y Nemirovsky
Journal:  J Mol Biol       Date:  2001-09-28       Impact factor: 5.469

3.  Protein nucleation and crystallization by homologous protein thin film template.

Authors:  Eugenia Pechkova; Claudio Nicolini
Journal:  J Cell Biochem       Date:  2002       Impact factor: 4.429

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Authors:  R Cudney; S Patel; K Weisgraber; Y Newhouse; A McPherson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

5.  Atomic structure of a CK2alpha human kinase by microfocus diffraction of extra-small microcrystals grown with nanobiofilm template.

Authors:  Eugenia Pechkova; Claudio Nicolini
Journal:  J Cell Biochem       Date:  2004-04-01       Impact factor: 4.429

6.  Onset of heterogeneous crystal nucleation in colloidal suspensions.

Authors:  A Cacciuto; S Auer; D Frenkel
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

7.  Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy.

Authors:  Janet Newman; David Egan; Thomas S Walter; Ran Meged; Ian Berry; Marouane Ben Jelloul; Joel L Sussman; David I Stuart; Anastassis Perrakis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

8.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

9.  Pi sampling: a methodical and flexible approach to initial macromolecular crystallization screening.

Authors:  Fabrice Gorrec; Colin M Palmer; Guillaume Lebon; Tony Warne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-04-07

10.  Heterogeneous nucleation of protein crystals on fluorinated layered silicate.

Authors:  Keita Ino; Itsumi Udagawa; Kazuki Iwabata; Yoichi Takakusagi; Munehiro Kubota; Keiichi Kurosaka; Kazuhito Arai; Yasutaka Seki; Masaya Nogawa; Tatsuo Tsunoda; Fujio Mizukami; Hayao Taguchi; Kengo Sakaguchi
Journal:  PLoS One       Date:  2011-07-27       Impact factor: 3.240

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  16 in total

Review 1.  Can the propensity of protein crystallization be increased by using systematic screening with metals?

Authors:  Raghurama P Hegde; Gowribidanur C Pavithra; Debayan Dey; Steven C Almo; S Ramakumar; Udupi A Ramagopal
Journal:  Protein Sci       Date:  2017-06-29       Impact factor: 6.725

Review 2.  Understanding pre-mRNA splicing through crystallography.

Authors:  Sara Espinosa; Lingdi Zhang; Xueni Li; Rui Zhao
Journal:  Methods       Date:  2017-05-12       Impact factor: 3.608

3.  Langmuir-Blodgett nanotemplates for protein crystallography.

Authors:  Eugenia Pechkova; Claudio Nicolini
Journal:  Nat Protoc       Date:  2017-11-30       Impact factor: 13.491

4.  Expression and purification of an engineered, yeast-expressed Leishmania donovani nucleoside hydrolase with immunogenic properties.

Authors:  Elissa M Hudspeth; Qian Wang; Christopher A Seid; Molly Hammond; Junfei Wei; Zhuyun Liu; Bin Zhan; Jeroen Pollet; Michael J Heffernan; C Patrick McAtee; David A Engler; Risë K Matsunami; Ulrich Strych; Oluwatoyin A Asojo; Peter J Hotez; Maria Elena Bottazzi
Journal:  Hum Vaccin Immunother       Date:  2016-02-02       Impact factor: 3.452

5.  Progress in macromolecular crystallography depends on further miniaturization of crystallization experiments.

Authors:  Fabrice Gorrec
Journal:  Drug Discov Today       Date:  2014-07-15       Impact factor: 7.851

6.  The MORPHEUS II protein crystallization screen.

Authors:  Fabrice Gorrec
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

7.  Room Temperature Crystallization of Hydroxyapatite in Porous Silicon Structures.

Authors:  M Santana; J O Estevez; V Agarwal; R Herrera-Becerra
Journal:  Nanoscale Res Lett       Date:  2016-11-10       Impact factor: 4.703

8.  A detergent-based procedure for the preparation of IgG-like bispecific antibodies in high yield.

Authors:  Jyoti Gupta; Mehboob Hoque; Masihuz Zaman; Rizwan Hasan Khan; M Saleemuddin
Journal:  Sci Rep       Date:  2016-12-16       Impact factor: 4.379

9.  X-ray crystallographic studies of RoAb13 bound to PIYDIN, a part of the N-terminal domain of C-C chemokine receptor 5.

Authors:  Lata Govada; Emmanuel Saridakis; Sean C Kassen; Ahmad Bin-Ramzi; Rhodri Marc Morgan; Benjamin Chain; John R Helliwell; Naomi E Chayen
Journal:  IUCrJ       Date:  2021-07-01       Impact factor: 4.769

10.  Automating the application of smart materials for protein crystallization.

Authors:  Sahir Khurshid; Lata Govada; Hazim F El-Sharif; Subrayal M Reddy; Naomi E Chayen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-02-26
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