Literature DB >> 19325131

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event.

Jeffrey A Fawcett1, Steven Maere, Yves Van de Peer.   

Abstract

Most flowering plants have been shown to be ancient polyploids that have undergone one or more whole genome duplications early in their evolution. Furthermore, many different plant lineages seem to have experienced an additional, more recent genome duplication. Starting from paralogous genes lying in duplicated segments or identified in large expressed sequence tag collections, we dated these youngest duplication events through penalized likelihood phylogenetic tree inference. We show that a majority of these independent genome duplications are clustered in time and seem to coincide with the Cretaceous-Tertiary (KT) boundary. The KT extinction event is the most recent mass extinction caused by one or more catastrophic events such as a massive asteroid impact and/or increased volcanic activity. These events are believed to have generated global wildfires and dust clouds that cut off sunlight during long periods of time resulting in the extinction of approximately 60% of plant species, as well as a majority of animals, including dinosaurs. Recent studies suggest that polyploid species can have a higher adaptability and increased tolerance to different environmental conditions. We propose that polyploidization may have contributed to the survival and propagation of several plant lineages during or following the KT extinction event. Due to advantages such as altered gene expression leading to hybrid vigor and an increased set of genes and alleles available for selection, polyploid plants might have been better able to adapt to the drastically changed environment 65 million years ago.

Entities:  

Mesh:

Year:  2009        PMID: 19325131      PMCID: PMC2667025          DOI: 10.1073/pnas.0900906106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  Hybridization as a stimulus for the evolution of invasiveness in plants?

Authors:  N C Ellstrand; K A Schierenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Performance of a divergence time estimation method under a probabilistic model of rate evolution.

Authors:  H Kishino; J L Thorne; W J Bruno
Journal:  Mol Biol Evol       Date:  2001-03       Impact factor: 16.240

Review 3.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

Review 4.  The advantages and disadvantages of being polyploid.

Authors:  Luca Comai
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

5.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

Review 6.  Novel patterns of gene expression in polyploid plants.

Authors:  Keith L Adams; Jonathan F Wendel
Journal:  Trends Genet       Date:  2005-10       Impact factor: 11.639

7.  Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years.

Authors:  Michael S Barker; Nolan C Kane; Marta Matvienko; Alexander Kozik; Richard W Michelmore; Steven J Knapp; Loren H Rieseberg
Journal:  Mol Biol Evol       Date:  2008-08-26       Impact factor: 16.240

8.  Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.

Authors:  Haibao Tang; Xiyin Wang; John E Bowers; Ray Ming; Maqsudul Alam; Andrew H Paterson
Journal:  Genome Res       Date:  2008-10-02       Impact factor: 9.043

9.  The evolutionary dynamics of polyploid plants: origins, establishment and persistence.

Authors:  J D Thompson; R Lumaret
Journal:  Trends Ecol Evol       Date:  1992-09       Impact factor: 17.712

10.  Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio.

Authors:  Matthew J Hegarty; Gary L Barker; Adrian C Brennan; Keith J Edwards; Richard J Abbott; Simon J Hiscock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-09-27       Impact factor: 6.237

View more
  224 in total

1.  Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana.

Authors:  Mark A Beilstein; Nathalie S Nagalingum; Mark D Clements; Steven R Manchester; Sarah Mathews
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 2.  Morphological evolution in land plants: new designs with old genes.

Authors:  Nuno D Pires; Liam Dolan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-02-19       Impact factor: 6.237

3.  Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae).

Authors:  Michael Chester; Joseph P Gallagher; V Vaughan Symonds; Ana Veruska Cruz da Silva; Evgeny V Mavrodiev; Andrew R Leitch; Pamela S Soltis; Douglas E Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-06       Impact factor: 11.205

Review 4.  The more the better? The role of polyploidy in facilitating plant invasions.

Authors:  Mariska te Beest; Johannes J Le Roux; David M Richardson; Anne K Brysting; Jan Suda; Magdalena Kubesová; Petr Pysek
Journal:  Ann Bot       Date:  2011-10-31       Impact factor: 4.357

5.  Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales.

Authors:  Tao Shi; Hongwen Huang; Michael S Barker
Journal:  Ann Bot       Date:  2010-06-24       Impact factor: 4.357

Review 6.  The polyploidy and its key role in plant breeding.

Authors:  Mariana Cansian Sattler; Carlos Roberto Carvalho; Wellington Ronildo Clarindo
Journal:  Planta       Date:  2015-12-29       Impact factor: 4.116

7.  Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard.

Authors:  Céline Geiser; Terezie Mandáková; Nils Arrigo; Martin A Lysak; Christian Parisod
Journal:  Plant Cell       Date:  2015-12-14       Impact factor: 11.277

8.  Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max).

Authors:  Sofie Van Holle; Pierre Rougé; Els J M Van Damme
Journal:  Ann Bot       Date:  2017-03-01       Impact factor: 4.357

9.  Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval.

Authors:  Liming Cai; Zhenxiang Xi; André M Amorim; M Sugumaran; Joshua S Rest; Liang Liu; Charles C Davis
Journal:  New Phytol       Date:  2018-07-21       Impact factor: 10.151

10.  Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Authors:  Andrew H Paterson; Jonathan F Wendel; Heidrun Gundlach; Hui Guo; Jerry Jenkins; Dianchuan Jin; Danny Llewellyn; Kurtis C Showmaker; Shengqiang Shu; Joshua Udall; Mi-jeong Yoo; Robert Byers; Wei Chen; Adi Doron-Faigenboim; Mary V Duke; Lei Gong; Jane Grimwood; Corrinne Grover; Kara Grupp; Guanjing Hu; Tae-ho Lee; Jingping Li; Lifeng Lin; Tao Liu; Barry S Marler; Justin T Page; Alison W Roberts; Elisson Romanel; William S Sanders; Emmanuel Szadkowski; Xu Tan; Haibao Tang; Chunming Xu; Jinpeng Wang; Zining Wang; Dong Zhang; Lan Zhang; Hamid Ashrafi; Frank Bedon; John E Bowers; Curt L Brubaker; Peng W Chee; Sayan Das; Alan R Gingle; Candace H Haigler; David Harker; Lucia V Hoffmann; Ran Hovav; Donald C Jones; Cornelia Lemke; Shahid Mansoor; Mehboob ur Rahman; Lisa N Rainville; Aditi Rambani; Umesh K Reddy; Jun-kang Rong; Yehoshua Saranga; Brian E Scheffler; Jodi A Scheffler; David M Stelly; Barbara A Triplett; Allen Van Deynze; Maite F S Vaslin; Vijay N Waghmare; Sally A Walford; Robert J Wright; Essam A Zaki; Tianzhen Zhang; Elizabeth S Dennis; Klaus F X Mayer; Daniel G Peterson; Daniel S Rokhsar; Xiyin Wang; Jeremy Schmutz
Journal:  Nature       Date:  2012-12-20       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.