Literature DB >> 25225596

Pragmatic turn in biology: From biological molecules to genetic content operators.

Guenther Witzany1.   

Abstract

Erwin Schrödinger's question "What is life?" received the answer for decades of "physics + chemistry". The concepts of Alain Turing and John von Neumann introduced a third term: "information". This led to the understanding of nucleic acid sequences as a natural code. Manfred Eigen adapted the concept of Hammings "sequence space". Similar to Hilbert space, in which every ontological entity could be defined by an unequivocal point in a mathematical axiomatic system, in the abstract "sequence space" concept each point represents a unique syntactic structure and the value of their separation represents their dissimilarity. In this concept molecular features of the genetic code evolve by means of self-organisation of matter. Biological selection determines the fittest types among varieties of replication errors of quasi-species. The quasi-species concept dominated evolution theory for many decades. In contrast to this, recent empirical data on the evolution of DNA and its forerunners, the RNA-world and viruses indicate cooperative agent-based interactions. Group behaviour of quasi-species consortia constitute de novo and arrange available genetic content for adaptational purposes within real-life contexts that determine epigenetic markings. This review focuses on some fundamental changes in biology, discarding its traditional status as a subdiscipline of physics and chemistry.

Entities:  

Keywords:  Genetic content operators; Incompleteness theorem; Information; Life; Quasi-species

Year:  2014        PMID: 25225596      PMCID: PMC4160522          DOI: 10.4331/wjbc.v5.i3.279

Source DB:  PubMed          Journal:  World J Biol Chem        ISSN: 1949-8454


  56 in total

1.  Can mathematics explain the evolution of human language?

Authors:  Guenther Witzany
Journal:  Commun Integr Biol       Date:  2011-09-01

2.  The error threshold.

Authors:  Christof K Biebricher; Manfred Eigen
Journal:  Virus Res       Date:  2005-02       Impact factor: 3.303

Review 3.  Retrotransposons, reverse transcriptase and the genesis of new genetic information.

Authors:  Ilaria Sciamanna; Patrizia Vitullo; Angela Curatolo; Corrado Spadafora
Journal:  Gene       Date:  2009-07-21       Impact factor: 3.688

4.  Viruses are essential agents within the roots and stem of the tree of life.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Theor Biol       Date:  2009-10-13       Impact factor: 2.691

5.  Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site.

Authors:  J S Lodmell; C Ehresmann; B Ehresmann; R Marquet
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

6.  The evolution of language.

Authors:  M A Nowak; D C Krakauer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

7.  Social networking between mobile introns and their host genes.

Authors:  Barry Stoddard; Marlene Belfort
Journal:  Mol Microbiol       Date:  2010-10       Impact factor: 3.501

Review 8.  Viral ancestors of antiviral systems.

Authors:  Luis P Villarreal
Journal:  Viruses       Date:  2011-10-20       Impact factor: 5.048

9.  A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses.

Authors:  Geoffrey S Diemer; Kenneth M Stedman
Journal:  Biol Direct       Date:  2012-06-11       Impact factor: 4.540

10.  The DNA Habitat and its RNA Inhabitants: At the Dawn of RNA Sociology.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  Genomics Insights       Date:  2013-03-04
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  5 in total

1.  When Competing Viruses Unify: Evolution, Conservation, and Plasticity of Genetic Identities.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Mol Evol       Date:  2015-05-27       Impact factor: 2.395

Review 2.  RNA sociology: group behavioral motifs of RNA consortia.

Authors:  Guenther Witzany
Journal:  Life (Basel)       Date:  2014-11-24

3.  Two genetic codes: Repetitive syntax for active non-coding RNAs; non-repetitive syntax for the DNA archives.

Authors:  Guenther Witzany
Journal:  Commun Integr Biol       Date:  2017-03-15

Review 4.  Social Networking of Quasi-Species Consortia drive Virolution via Persistence.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  AIMS Microbiol       Date:  2021-04-30

5.  The biocommunication method: On the road to an integrative biology.

Authors:  Guenther Witzany
Journal:  Commun Integr Biol       Date:  2016-04-08
  5 in total

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