Literature DB >> 19318209

Synthetic metabolism: engineering biology at the protein and pathway scales.

Collin H Martin1, David R Nielsen, Kevin V Solomon, Kristala L Jones Prather.   

Abstract

Biocatalysis has become a powerful tool for the synthesis of high-value compounds, particularly so in the case of highly functionalized and/or stereoactive products. Nature has supplied thousands of enzymes and assembled them into numerous metabolic pathways. Although these native pathways can be use to produce natural bioproducts, there are many valuable and useful compounds that have no known natural biochemical route. Consequently, there is a need for both unnatural metabolic pathways and novel enzymatic activities upon which these pathways can be built. Here, we review the theoretical and experimental strategies for engineering synthetic metabolic pathways at the protein and pathway scales, and highlight the challenges that this subfield of synthetic biology currently faces.

Mesh:

Year:  2009        PMID: 19318209     DOI: 10.1016/j.chembiol.2009.01.010

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  24 in total

Review 1.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

Review 2.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

Review 3.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

4.  The conception of life in synthetic biology.

Authors:  Anna Deplazes-Zemp
Journal:  Sci Eng Ethics       Date:  2011-04-12       Impact factor: 3.525

5.  Modular electron transfer circuits for synthetic biology: insulation of an engineered biohydrogen pathway.

Authors:  Christina M Agapakis; Pamela A Silver
Journal:  Bioeng Bugs       Date:  2010 Nov-Dec

Review 6.  Type IV pilin proteins: versatile molecular modules.

Authors:  Carmen L Giltner; Ylan Nguyen; Lori L Burrows
Journal:  Microbiol Mol Biol Rev       Date:  2012-12       Impact factor: 11.056

7.  Optimizing pentose utilization in yeast: the need for novel tools and approaches.

Authors:  Eric Young; Sun-Mi Lee; Hal Alper
Journal:  Biotechnol Biofuels       Date:  2010-11-16       Impact factor: 6.040

8.  MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.

Authors:  Hiroyuki Kuwahara; Meshari Alazmi; Xuefeng Cui; Xin Gao
Journal:  Nucleic Acids Res       Date:  2016-04-29       Impact factor: 16.971

Review 9.  Synthetic biology: understanding biological design from synthetic circuits.

Authors:  Shankar Mukherji; Alexander van Oudenaarden
Journal:  Nat Rev Genet       Date:  2009-11-10       Impact factor: 53.242

10.  Synthetic biology: ethical ramifications 2009.

Authors:  Paul Rabinow; Gaymon Bennett
Journal:  Syst Synth Biol       Date:  2009-10-10
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