Literature DB >> 21468209

Modular electron transfer circuits for synthetic biology: insulation of an engineered biohydrogen pathway.

Christina M Agapakis1, Pamela A Silver.   

Abstract

Electron transfer is central to a wide range of essential metabolic pathways, from photosynthesis to fermentation. The evolutionary diversity and conservation of proteins that transfer electrons makes these pathways a valuable platform for engineered metabolic circuits in synthetic biology. Rational engineering of electron transfer pathways containing hydrogenases has the potential to lead to industrial scale production of hydrogen as an alternative source of clean fuel and experimental assays for understanding the complex interactions of multiple electron transfer proteins in vivo. We designed and implemented a synthetic hydrogen metabolism circuit in Escherichia coli that creates an electron transfer pathway both orthogonal to and integrated within existing metabolism. The design of such modular electron transfer circuits allows for facile characterization of in vivo system parameters with applications toward further engineering for alternative energy production.
© 2010 Landes Bioscience

Entities:  

Keywords:  electron transfer; ferredoxin; hydrogen; iron-sulfur cluster; modularity; synthetic biology

Mesh:

Substances:

Year:  2010        PMID: 21468209      PMCID: PMC3056092          DOI: 10.4161/bbug.1.6.12462

Source DB:  PubMed          Journal:  Bioeng Bugs        ISSN: 1949-1018


  51 in total

1.  Building a Parallel Metabolism within the Cell.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  ACS Chem Biol       Date:  2008-01-04       Impact factor: 5.100

Review 2.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

3.  Electrostatic forces involved in orienting Anabaena ferredoxin during binding to Anabaena ferredoxin:NADP+ reductase: site-specific mutagenesis, transient kinetic measurements, and electrostatic surface potentials.

Authors:  J K Hurley; J T Hazzard; M Martínez-Júlvez; M Medina; C Gómez-Moreno; G Tollin
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

Review 4.  Synthetic gene circuits: design with directed evolution.

Authors:  Eric L Haseltine; Frances H Arnold
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

5.  Identification of the amino acids involved in the functional interaction between photosystem I and ferredoxin from Synechocystis sp. PCC 6803 by chemical cross-linking.

Authors:  C Lelong; P Sétif; B Lagoutte; H Bottin
Journal:  J Biol Chem       Date:  1994-04-01       Impact factor: 5.157

6.  A post genomic characterization of Arabidopsis ferredoxins.

Authors:  Guy Thomas Hanke; Yoko Kimata-Ariga; Isao Taniguchi; Toshiharu Hase
Journal:  Plant Physiol       Date:  2003-12-18       Impact factor: 8.340

7.  Characterization of two 2[4Fe4S] ferredoxins from Clostridium acetobutylicum.

Authors:  Olivier Guerrini; Bénédicte Burlat; Christophe Léger; Bruno Guigliarelli; Philippe Soucaille; Laurence Girbal
Journal:  Curr Microbiol       Date:  2007-12-12       Impact factor: 2.188

8.  Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system.

Authors:  Paul W King; Matthew C Posewitz; Maria L Ghirardi; Michael Seibert
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

9.  Site-specific mutations in human ferredoxin that affect binding to ferredoxin reductase and cytochrome P450scc.

Authors:  V M Coghlan; L E Vickery
Journal:  J Biol Chem       Date:  1991-10-05       Impact factor: 5.157

Review 10.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

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3.  In-Cell Enzymology To Probe His-Heme Ligation in Heme Oxygenase Catalysis.

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Journal:  Biochemistry       Date:  2016-08-15       Impact factor: 3.162

Review 4.  Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics.

Authors:  Parisa Hosseinzadeh; Yi Lu
Journal:  Biochim Biophys Acta       Date:  2015-08-21

5.  A framework and model system to investigate linear system behavior in Escherichia coli.

Authors:  Meghdad Hajimorad; Paul R Gray; Jay D Keasling
Journal:  J Biol Eng       Date:  2011-04-22       Impact factor: 4.355

6.  Computer-aided biochemical programming of synthetic microreactors as diagnostic devices.

Authors:  Alexis Courbet; Patrick Amar; François Fages; Eric Renard; Franck Molina
Journal:  Mol Syst Biol       Date:  2018-04-26       Impact factor: 11.429

Review 7.  Towards a Synthetic Biology Toolset for Metallocluster Enzymes in Biosynthetic Pathways: What We Know and What We Need.

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