Literature DB >> 19318208

Recent progress toward the templated synthesis and directed evolution of sequence-defined synthetic polymers.

Yevgeny Brudno1, David R Liu.   

Abstract

Biological polymers such as nucleic acids and proteins are ubiquitous in living systems, but their ability to address problems beyond those found in nature is constrained by factors such as chemical or biological instability, limited building-block functionality, bioavailability, and immunogenicity. In principle, sequence-defined synthetic polymers based on nonbiological monomers and backbones might overcome these constraints; however, identifying the sequence of a synthetic polymer that possesses a specific desired functional property remains a major challenge. Molecular evolution can rapidly generate functional polymers but requires a means of translating amplifiable templates such as nucleic acids into the polymer being evolved. This review covers recent advances in the enzymatic and nonenzymatic templated polymerization of nonnatural polymers and their potential applications in the directed evolution of sequence-defined synthetic polymers.

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Year:  2009        PMID: 19318208      PMCID: PMC2692969          DOI: 10.1016/j.chembiol.2009.02.004

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  145 in total

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Review 2.  Synthesis of biopolymers using genetic code reprogramming.

Authors:  Atsushi Ohta; Yusuke Yamagishi; Hiroaki Suga
Journal:  Curr Opin Chem Biol       Date:  2008-02-29       Impact factor: 8.822

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Journal:  Chem Biol       Date:  2008-01

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Review 5.  High-throughput screening of cell responses to biomaterials.

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Journal:  Eur J Pharm Sci       Date:  2008-05-21       Impact factor: 4.384

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Journal:  Biopolymers       Date:  1998       Impact factor: 2.505

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Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

9.  Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor.

Authors:  Frank V Cochran; Sophia P Wu; Wei Wang; Vikas Nanda; Jeffery G Saven; Michael J Therien; William F DeGrado
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

10.  Enzymatic aminoacylation of tRNA with unnatural amino acids.

Authors:  Matthew C T Hartman; Kristopher Josephson; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

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  18 in total

Review 1.  Knitting complex weaves with DNA origami.

Authors:  William M Shih; Chenxiang Lin
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

Review 2.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

3.  Sequence-regulated vinyl copolymers by metal-catalysed step-growth radical polymerization.

Authors:  Kotaro Satoh; Satoshi Ozawa; Masato Mizutani; Kanji Nagai; Masami Kamigaito
Journal:  Nat Commun       Date:  2010-04-12       Impact factor: 14.919

4.  Evolution of synthetic polymers.

Authors:  Alexander Roloff; Oliver Seitz
Journal:  Artif DNA PNA XNA       Date:  2010-10

5.  Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity.

Authors:  Simon G Trevino; Na Zhang; Mark P Elenko; Andrej Lupták; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

Review 6.  DNA-encoded chemistry: enabling the deeper sampling of chemical space.

Authors:  Robert A Goodnow; Christoph E Dumelin; Anthony D Keefe
Journal:  Nat Rev Drug Discov       Date:  2016-12-09       Impact factor: 84.694

7.  Single-chain technology using discrete synthetic macromolecules.

Authors:  Makoto Ouchi; Nezha Badi; Jean-François Lutz; Mitsuo Sawamoto
Journal:  Nat Chem       Date:  2011-11-13       Impact factor: 24.427

Review 8.  Biology by design: from top to bottom and back.

Authors:  Brian R Fritz; Laura E Timmerman; Nichole M Daringer; Joshua N Leonard; Michael C Jewett
Journal:  J Biomed Biotechnol       Date:  2010-11-02

9.  CyDNA: synthesis and replication of highly Cy-dye substituted DNA by an evolved polymerase.

Authors:  Nicola Ramsay; Ann-Sofie Jemth; Anthony Brown; Neal Crampton; Paul Dear; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

10.  An in vitro translation, selection and amplification system for peptide nucleic acids.

Authors:  Yevgeny Brudno; Michael E Birnbaum; Ralph E Kleiner; David R Liu
Journal:  Nat Chem Biol       Date:  2009-12-27       Impact factor: 15.040

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