Literature DB >> 19304839

Cultivation of fastidious bacteria by viability staining and micromanipulation in a soil substrate membrane system.

B C Ferrari1, M R Gillings.   

Abstract

Soil substrate membrane systems allow for microcultivation of fastidious soil bacteria as mixed microbial communities. We isolated established microcolonies from these membranes by using fluorescence viability staining and micromanipulation. This approach facilitated the recovery of diverse, novel isolates, including the recalcitrant bacterium Leifsonia xyli, a plant pathogen that has never been isolated outside the host.

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Year:  2009        PMID： 19304839      PMCID： PMC2681634          DOI： 10.1128/AEM.02407-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  28 in total

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Authors:  Peter H Janssen; Penelope S Yates; Bronwyn E Grinton; Paul M Taylor; Michelle Sait
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2.  Microbiology. New method for culturing bacteria.

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Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

3.  Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian arid soils.

Authors: 
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4.  Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria.

Authors:  Belinda C Ferrari; Svend J Binnerup; Michael Gillings
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

5.  Catalyzed reporter deposition-fluorescence in situ hybridization allows for enrichment-independent detection of microcolony-forming soil bacteria.

Authors:  Belinda C Ferrari; Niina Tujula; Kate Stoner; Staffan Kjelleberg
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

6.  Dimethyl sulfoxide (DMSO) waste residues and municipal waste water odor by dimethyl sulfide (DMS): the north-east WPCP plant of Philadelphia.

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Journal:  Environ Sci Technol       Date:  2006-01-01       Impact factor: 9.028

7.  Cultivating previously uncultured soil bacteria using a soil substrate membrane system.

Authors:  Belinda C Ferrari; Tristrom Winsley; Michael Gillings; Svend Binnerup
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

Review 8.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

Review 9.  Flow cytometry and cell sorting of heterogeneous microbial populations: the importance of single-cell analyses.

Authors:  H M Davey; D B Kell
Journal:  Microbiol Rev       Date:  1996-12

10.  Enumeration of water-borne bacteria using viability assays and flow cytometry: a comparison to culture-based techniques.

Authors:  Daniel Hoefel; Warwick L Grooby; Paul T Monis; Stuart Andrews; Christopher P Saint
Journal:  J Microbiol Methods       Date:  2003-12       Impact factor: 2.363
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  12 in total

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Authors:  Eric J Stewart
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

Review 2.  Selected fluorescent techniques for identification of the physiological state of individual water and soil bacterial cells - review.

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Journal:  Folia Microbiol (Praha)       Date:  2010-05-19       Impact factor: 2.099

3.  Central role of the cell in microbial ecology.

Authors:  Karsten Zengler
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

4.  Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species.

Authors:  D Nichols; N Cahoon; E M Trakhtenberg; L Pham; A Mehta; A Belanger; T Kanigan; K Lewis; S S Epstein
Journal:  Appl Environ Microbiol       Date:  2010-02-19       Impact factor: 4.792

Review 5.  Insights into microbial diversity on plastisphere by multi-omics.

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6.  Initial development and structure of biofilms on microbial fuel cell anodes.

Authors:  Suzanne T Read; Paritam Dutta; Phillip L Bond; Jürg Keller; Korneel Rabaey
Journal:  BMC Microbiol       Date:  2010-04-01       Impact factor: 3.605

7.  Recovering greater fungal diversity from pristine and diesel fuel contaminated sub-antarctic soil through cultivation using both a high and a low nutrient media approach.

Authors:  Belinda C Ferrari; Chengdong Zhang; Josie van Dorst
Journal:  Front Microbiol       Date:  2011-11-15       Impact factor: 5.640

8.  Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil.

Authors:  J M van Dorst; G Hince; I Snape; B C Ferrari
Journal:  Sci Rep       Date:  2016-11-09       Impact factor: 4.379

9.  Study of Bacterial Community Composition and Correlation of Environmental Variables in Rambla Salada, a Hypersaline Environment in South-Eastern Spain.

Authors:  Nahid Oueriaghli; David J Castro; Inmaculada Llamas; Victoria Béjar; Fernando Martínez-Checa
Journal:  Front Microbiol       Date:  2018-06-21       Impact factor: 5.640

Review 10.  Recent advances in the discovery and development of marine microbial natural products.

Authors:  Zhi-Qiang Xiong; Jian-Feng Wang; Yu-You Hao; Yong Wang
Journal:  Mar Drugs       Date:  2013-03-08       Impact factor: 5.118
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