Literature DB >> 35316402

Insights into microbial diversity on plastisphere by multi-omics.

Neha Tiwari1, Megha Bansal1, Deenan Santhiya2, Jai Gopal Sharma1.   

Abstract

Plastic pollution is a major concern in marine environment as it takes many years to degrade and is one of the greatest threats to marine life. Plastic surface, referred to as plastisphere, provides habitat for growth and proliferation of various microorganisms. The discovery of these microbes is necessary to identify significant genes, enzymes and bioactive compounds that could help in bioremediation and other commercial applications. Conventional culture techniques have been successful in identifying few microbes from these habitats, leaving majority of them yet to be explored. As such, to recognize the vivid genetic diversity of microbes residing in plastisphere, their structure and corresponding ecological roles within the ecosystem, an emerging technique, called metagenomics has been explored. The technique is expected to provide hitherto unknown information on microbes from the plastisphere. Metagenomics along with next generation sequencing provides comprehensive knowledge on microbes residing in plastisphere that identifies novel microbes for plastic bioremediation, bioactive compounds and other potential benefits. The following review summarizes the efficiency of metagenomics and next generation sequencing technology over conventionally used methods for culturing microbes. It attempts to illustrate the workflow mechanism of metagenomics to elucidate diverse microbial profiles. Further, importance of integrated multi-omics techniques has been highlighted in discovering microbial ecology residing on plastisphere for wider applications.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Bioremediation; Metagenomics; Microbes; Multi-omics; Next generation sequencing; Plastisphere

Mesh:

Substances:

Year:  2022        PMID: 35316402     DOI: 10.1007/s00203-022-02806-z

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  90 in total

1.  Isolation of functional single cells from environments using a micromanipulator: application to study denitrifying bacteria.

Authors:  Naoaki Ashida; Satoshi Ishii; Sadakazu Hayano; Kanako Tago; Takashi Tsuji; Yoshitaka Yoshimura; Shigeto Otsuka; Keishi Senoo
Journal:  Appl Microbiol Biotechnol       Date:  2009-11-20       Impact factor: 4.813

2.  Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing.

Authors:  Geetika Bhagwat; Qiyun Zhu; Wayne O'Connor; Suresh Subashchandrabose; Ian Grainge; Rob Knight; Thava Palanisami
Journal:  Environ Sci Technol       Date:  2021-03-09       Impact factor: 9.028

3.  Metagenomic analysis of the bacterial communities and their functional profiles in water and sediments of the Apies River, South Africa, as a function of land use.

Authors:  Akebe Luther King Abia; Arghavan Alisoltani; Jitendra Keshri; Eunice Ubomba-Jaswa
Journal:  Sci Total Environ       Date:  2017-11-07       Impact factor: 7.963

4.  Greenhouse gas cycling by the plastisphere: The sleeper issue of plastic pollution.

Authors:  Marcela Cornejo-D'Ottone; Verónica Molina; Javiera Pavez; Nelson Silva
Journal:  Chemosphere       Date:  2019-12-19       Impact factor: 7.086

5.  Baseline analysis of metal(loid)s on microplastics collected from the Australian shoreline using citizen science.

Authors:  Maddison Carbery; Geoff R MacFarlane; Wayne O'Connor; Sania Afrose; Heidi Taylor; Thava Palanisami
Journal:  Mar Pollut Bull       Date:  2020-02-17       Impact factor: 5.553

Review 6.  Ecology of the plastisphere.

Authors:  Linda A Amaral-Zettler; Erik R Zettler; Tracy J Mincer
Journal:  Nat Rev Microbiol       Date:  2020-01-14       Impact factor: 60.633

7.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

8.  Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre.

Authors:  Jessica A Bryant; Tara M Clemente; Donn A Viviani; Allison A Fong; Kimberley A Thomas; Paul Kemp; David M Karl; Angelicque E White; Edward F DeLong
Journal:  mSystems       Date:  2016-05-17       Impact factor: 6.496

9.  Methane-Linked Mechanisms of Electron Uptake from Cathodes by Methanosarcina barkeri.

Authors:  Annette R Rowe; Shuai Xu; Emily Gardel; Arpita Bose; Peter Girguis; Jan P Amend; Mohamed Y El-Naggar
Journal:  mBio       Date:  2019-03-12       Impact factor: 7.867

10.  Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research.

Authors:  Kari Oline Bøifot; Jostein Gohli; Line Victoria Moen; Marius Dybwad
Journal:  Environ Microbiome       Date:  2020-01-13
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