Literature DB >> 19301142

Evaluation of coupled perturbed and density functional methods of computing the parity-violating energy difference between enantiomers.

A J MacDermott1, G O Hyde, A J Cohen.   

Abstract

We present new coupled-perturbed Hartree-Fock (CPHF) and density functional theory (DFT) computations of the parity-violating energy difference (PVED) between enantiomers for H(2)O(2) and H(2)S(2). Our DFT PVED computations are the first for H(2)S(2) and the first with the new HCTH and OLYP functionals. Like other "second generation" PVED computations, our results are an order of magnitude larger than the original "first generation" uncoupled-perturbed Hartree-Fock computations of Mason and Tranter. We offer an explanation for the dramatically larger size in terms of cancellation of contributions of opposing signs, which also explains the basis set sensitivity of the PVED, and its conformational hypersensitivity (addressed in the following paper). This paper also serves as a review of the different types of "second generation" PVED computations: we set our work in context, comparing our results with those of four other groups, and noting the good agreement between results obtained by very different methods. DFT PVEDs tend to be somewhat inflated compared to the CPHF values, but this is not a problem when only sign and order of magnitude are required. Our results with the new OLYP functional are less inflated than those with other functionals, and OLYP is also more efficient computationally. We therefore conclude that DFT computation offers a promising approach for low-cost extension to larger biosystems, especially polymers. The following two papers extend to terrestrial and extra-terrestrial amino acids respectively, and later work will extend to polymers.

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Year:  2009        PMID: 19301142     DOI: 10.1007/s11084-009-9163-8

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  6 in total

1.  The ascent of parity-violation: exochirality in the solar system and beyond

Authors: 
Journal:  Enantiomer       Date:  2000

Review 2.  How important is parity violation for molecular and biomolecular chirality?

Authors:  Martin Quack
Journal:  Angew Chem Int Ed Engl       Date:  2002-12-16       Impact factor: 15.336

3.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

4.  Selection of molecular chirality by extremely weak chiral interactions under far-from-equilibrium conditions.

Authors:  D K Kondepudi
Journal:  Biosystems       Date:  1987       Impact factor: 1.973

5.  A hypothesis for the asymmetric appearance of biomolecules on earth.

Authors:  Y Yamagata
Journal:  J Theor Biol       Date:  1966-08       Impact factor: 2.691

6.  Electroweak enantioselection and the origin of life.

Authors:  A J MacDermott
Journal:  Orig Life Evol Biosph       Date:  1995-06       Impact factor: 1.950

  6 in total
  2 in total

1.  Electroweak parity-violating energy shifts of amino acids: the "conformation problem".

Authors:  A J MacDermott; T Fu; G O Hyde; R Nakatsuka; A P Coleman
Journal:  Orig Life Evol Biosph       Date:  2009-03-17       Impact factor: 1.950

2.  Parity-violating energy shifts of Murchison L-amino acids are consistent with an electroweak origin of meteorite L-enantiomeric excesses.

Authors:  A J MacDermott; T Fu; R Nakatsuka; A P Coleman; G O Hyde
Journal:  Orig Life Evol Biosph       Date:  2009-03-24       Impact factor: 1.950

  2 in total

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