Literature DB >> 21445000

Splicing of an intervening sequence by protein-free human snRNAs.

Yasaman Jaladat1, Bing Zhang, Afshin Mohammadi, Saba Valadkhan.   

Abstract

Significant structural and mechanistic similarities between the spliceosomal snRNAs and catalytically critical domains of self-splicing group II introns have led to the hypothesis that the spliceosomes and group II introns may be evolutionarily related. We have previously shown that in vitro-transcribed, protein-free U6 and U2 snRNAs can catalyze a two-step splicing reaction in trans on two short RNA oligonucleotides that is identical to the splicing reactions performed by many self-splicing group II introns. Here we show that the same two snRNAs can perform splicing in cis by removal of an intervening sequence from a model substrate. These results prove that the protein-free snRNAs are competent to perform splicing on pre-mRNAs and further strengthen the possibility of an evolutionary relationship to group II introns.
© 2011 Landes Bioscience

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Year:  2011        PMID: 21445000      PMCID: PMC3218507          DOI: 10.4161/rna.8.3.15386

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  27 in total

Review 1.  Group II introns: structure, folding and splicing mechanism.

Authors:  Olga Fedorova; Nora Zingler
Journal:  Biol Chem       Date:  2007-07       Impact factor: 3.915

Review 2.  The spliceosome: a ribozyme at heart?

Authors:  Saba Valadkhan
Journal:  Biol Chem       Date:  2007-07       Impact factor: 3.915

Review 3.  The spliceosome: design principles of a dynamic RNP machine.

Authors:  Markus C Wahl; Cindy L Will; Reinhard Lührmann
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  A glimpse into the active site of a group II intron and maybe the spliceosome, too.

Authors:  Kwaku T Dayie; Richard A Padgett
Journal:  RNA       Date:  2008-07-24       Impact factor: 4.942

Review 5.  The ribozyme core of group II introns: a structure in want of partners.

Authors:  François Michel; Maria Costa; Eric Westhof
Journal:  Trends Biochem Sci       Date:  2009-03-18       Impact factor: 13.807

6.  Protein-free small nuclear RNAs catalyze a two-step splicing reaction.

Authors:  Saba Valadkhan; Afshin Mohammadi; Yasaman Jaladat; Sarah Geisler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

Review 7.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

8.  A structural analysis of the group II intron active site and implications for the spliceosome.

Authors:  Kevin S Keating; Navtej Toor; Philip S Perlman; Anna Marie Pyle
Journal:  RNA       Date:  2009-11-30       Impact factor: 4.942

9.  Metal binding and substrate positioning by evolutionarily invariant U6 sequences in catalytically active protein-free snRNAs.

Authors:  Caroline Lee; Yasaman Jaladat; Afshin Mohammadi; Armin Sharifi; Sarah Geisler; Saba Valadkhan
Journal:  RNA       Date:  2010-09-08       Impact factor: 4.942

10.  RNAstructure: software for RNA secondary structure prediction and analysis.

Authors:  Jessica S Reuter; David H Mathews
Journal:  BMC Bioinformatics       Date:  2010-03-15       Impact factor: 3.169

View more
  6 in total

1.  RNAtomy of the Spliceosome's heart.

Authors:  Sophie Bonnal; Juan Valcárcel
Journal:  EMBO J       Date:  2013-09-24       Impact factor: 11.598

2.  Fixation and accumulation of thermotolerant catalytic competence of a pair of ligase ribozymes through complex formation and cross ligation.

Authors:  Nana Isomoto; Yuri Maeda; Takahiro Tanaka; Hiroyuki Furuta; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2013-01-04       Impact factor: 2.395

3.  U5 snRNA Interactions With Exons Ensure Splicing Precision.

Authors:  Olga V Artemyeva-Isman; Andrew C G Porter
Journal:  Front Genet       Date:  2021-07-02       Impact factor: 4.599

Review 4.  Mutations in spliceosomal proteins and retina degeneration.

Authors:  Šárka Růžičková; David Staněk
Journal:  RNA Biol       Date:  2016-06-14       Impact factor: 4.652

5.  Alternative processing of the U2 small nuclear RNA produces a 19-22nt fragment with relevance for the detection of non-small cell lung cancer in human serum.

Authors:  Julien Mazières; Caroline Catherinne; Olivier Delfour; Sandrine Gouin; Isabelle Rouquette; Marie-Bernadette Delisle; Grégoire Prévot; Roger Escamilla; Alain Didier; David H Persing; Mike Bates; Bernard Michot
Journal:  PLoS One       Date:  2013-03-20       Impact factor: 3.240

6.  RNA catalyses nuclear pre-mRNA splicing.

Authors:  Sebastian M Fica; Nicole Tuttle; Thaddeus Novak; Nan-Sheng Li; Jun Lu; Prakash Koodathingal; Qing Dai; Jonathan P Staley; Joseph A Piccirilli
Journal:  Nature       Date:  2013-11-06       Impact factor: 49.962

  6 in total

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