Literature DB >> 19269582

Characterization of endogenous pyridoxal 5'-phosphate-dependent alanine racemase from Bacillus pseudofirmus OF4.

Jiansong Ju1, Shujing Xu, Jianxin Wen, Gang Li, Kouhei Ohnishi, Yanfen Xue, Yanhe Ma.   

Abstract

An open reading frame of 1100 bp in the partially sequenced genome sequence of alkaliphilic Bacillus pseudofirmus OF4 was identified as a putative alanine racemase gene (dadX(OF4)), which was cloned and expressed in Escherichia coli BL21 (DE3). The encoded protein DadX(OF4) was purified to homogeneity by His(6)-tag affinity column, gel filtration and ion-exchange chromatography. The amino acid sequence has highest identity with the known alanine racemase from Oceanobacillus iheyensis HTE831 (48%). The protein was a dimeric, endogenous PLP-dependent enzyme, which was demonstrated by absorption spectra and enzyme activity with or without PLP. The racemization temperature optimum was 40 degrees C and the optimal pH was 10.5. The kinetic parameters K(m) and V(max) at 40 degrees C of alanine racemase, determined by HPLC analysis, were 41.79 mM, 10,500 units/mg for L-alanine and 14.91 mM, 3708 units/mg for D-alanine, respectively.

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Year:  2009        PMID: 19269582     DOI: 10.1016/j.jbiosc.2008.11.005

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  9 in total

1.  Expression, purification, and characterization of alanine racemase from Pseudomonas putida YZ-26.

Authors:  Jun-Lin Liu; Xiao-Qin Liu; Ya-Wei Shi
Journal:  World J Microbiol Biotechnol       Date:  2011-06-21       Impact factor: 3.312

2.  A bi-enzymatic cascade to yield pyruvate as co-substrate for L-tyrosine production.

Authors:  Xiaolei Guo; Weibin Wu; Mingliang Zhang; Licheng Wu; Jianzhong Huang
Journal:  Appl Microbiol Biotechnol       Date:  2020-10-31       Impact factor: 4.813

3.  Characterization and preliminary mutation analysis of a thermostable alanine racemase from Thermoanaerobacter tengcongensis MB4.

Authors:  Zhangwei Xue; Yi Hu; Shujing Xu; Kouhei Ohnishi; Yanhe Ma; Jiansong Ju; Baohua Zhao
Journal:  Extremophiles       Date:  2013-05-24       Impact factor: 2.395

4.  Crystallization and preliminary X-ray study of alanine dehydrogenase from Bacillus pseudofirmus OF4.

Authors:  Jinjin Wen; Zhenzhen Li; Guangzheng He; Shujing Xu; Baohua Zhao; Xianming Zhu; Hui Dong; Jiansong Ju
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-17

5.  Identification, purification, and characterization of a novel amino acid racemase, isoleucine 2-epimerase, from Lactobacillus species.

Authors:  Yuta Mutaguchi; Taketo Ohmori; Taisuke Wakamatsu; Katsumi Doi; Toshihisa Ohshima
Journal:  J Bacteriol       Date:  2013-09-13       Impact factor: 3.490

6.  Crystallization and preliminary X-ray study of alkaline alanine racemase from Bacillus pseudofirmus OF4.

Authors:  Jiansong Ju; Jianxun Qi; Shujing Xu; Kouhei Ohnishi; Michael J Benedik; Yanfen Xue; Yanhe Ma
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31

7.  Crystal Structure of a Thermostable Alanine Racemase from Thermoanaerobacter tengcongensis MB4 Reveals the Role of Gln360 in Substrate Selection.

Authors:  Xiaoliang Sun; Guangzheng He; Xiaoyan Wang; Shujing Xu; Jiansong Ju; Xiaoling Xu
Journal:  PLoS One       Date:  2015-07-28       Impact factor: 3.240

8.  Characterization of Lactobacillus salivarius alanine racemase: short-chain carboxylate-activation and the role of A131.

Authors:  Jyumpei Kobayashi; Jotaro Yukimoto; Yasuhiro Shimizu; Taketo Ohmori; Hirokazu Suzuki; Katsumi Doi; Toshihisa Ohshima
Journal:  Springerplus       Date:  2015-10-24

9.  Purification, Characterization and Inhibition of Alanine Racemase from a Pathogenic Strain of Streptococcus iniae.

Authors:  Murtala Muhammad; Yangyang Li; Siyu Gong; Yanmin Shi; Jiansong Ju; Baohua Zhao; Dong Liu
Journal:  Pol J Microbiol       Date:  2019-09-03
  9 in total

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