Literature DB >> 19269242

Directional functions for orientation distribution estimation.

Yogesh Rathi1, Oleg Michailovich, Martha E Shenton, Sylvain Bouix.   

Abstract

Computing the orientation distribution function (ODF) from high angular resolution diffusion imaging (HARDI) signals makes it possible to determine the orientation of fiber bundles of the brain. The HARDI signals are samples measured from a spherical shell and thus require processing on the sphere. Past work on ODF estimation involved using the spherical harmonics or spherical radial basis functions. In this work, we propose three novel directional functions able to represent the measured signals in a very compact manner, i.e., they require very few parameters to completely describe the measured signal. Analytical expressions are derived for computing the corresponding ODF. The directional functions can represent diffusion in a particular direction and mixture models can be used to represent multi-fiber orientations. We show how to estimate the parameters of this mixture model and elaborate on the differences between these functions. We also compare this general framework with estimation of ODF using spherical harmonics on some real and synthetic data. The proposed method could be particularly useful in applications such as tractography and segmentation. Details are also given on different ways in which interpolation can be performed using directional functions. In particular, we discuss a complete Euclidean as well as a "hybrid" framework, comprising of the Riemannian as well as Euclidean spaces, to perform interpolation and compute geodesic distances between two ODF's.

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Year:  2009        PMID: 19269242      PMCID: PMC2677112          DOI: 10.1016/j.media.2009.01.004

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  27 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  A normal distribution for tensor-valued random variables: applications to diffusion tensor MRI.

Authors:  Peter J Basser; Sinisa Pajevic
Journal:  IEEE Trans Med Imaging       Date:  2003-07       Impact factor: 10.048

3.  Generalized diffusion tensor imaging and analytical relationships between diffusion tensor imaging and high angular resolution diffusion imaging.

Authors:  Evren Ozarslan; Thomas H Mareci
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

4.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

5.  Diffusion k-tensor estimation from Q-ball imaging using discretized principal axes.

Authors:  Orjan Bergmann; Gordon Kindlmann; Arvid Lundervold; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

6.  Hyperspherical von Mises-Fisher mixture (HvMF) modelling of high angular resolution diffusion MRI.

Authors:  Abhir Bhalerao; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

7.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

8.  Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging.

Authors:  Enrico Kaden; Thomas R Knösche; Alfred Anwander
Journal:  Neuroimage       Date:  2007-05-18       Impact factor: 6.556

9.  Resolving crossing fibres using constrained spherical deconvolution: validation using diffusion-weighted imaging phantom data.

Authors:  J-Donald Tournier; Chun-Hung Yeh; Fernando Calamante; Kuan-Hung Cho; Alan Connelly; Ching-Po Lin
Journal:  Neuroimage       Date:  2008-05-09       Impact factor: 6.556

Review 10.  A review of diffusion tensor imaging studies in schizophrenia.

Authors:  Marek Kubicki; Robert McCarley; Carl-Fredrik Westin; Hae-Jeong Park; Stephan Maier; Ron Kikinis; Ferenc A Jolesz; Martha E Shenton
Journal:  J Psychiatr Res       Date:  2005-07-14       Impact factor: 4.791

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  18 in total

1.  Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle.

Authors:  Iman Aganj; Christophe Lenglet; Guillermo Sapiro; Essa Yacoub; Kamil Ugurbil; Noam Harel
Journal:  Magn Reson Med       Date:  2010-08       Impact factor: 4.668

2.  A full bi-tensor neural tractography algorithm using the unscented Kalman filter.

Authors:  Stefan Lienhard; James G Malcolm; Carl-Frederik Westin; Yogesh Rathi
Journal:  EURASIP J Adv Signal Process       Date:  2011-01-01

3.  Neural tractography using an unscented Kalman filter.

Authors:  James G Malcolm; Martha E Shenton; Yogesh Rathi
Journal:  Inf Process Med Imaging       Date:  2009

4.  Spatial warping of DWI data using sparse representation.

Authors:  Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

5.  Tensor kernels for simultaneous fiber model estimation and tractography.

Authors:  Yogesh Rathi; James G Malcolm; Oleg Michailovich; Carl-Fredrik Westin; Martha E Shenton; Sylvain Bouix
Journal:  Magn Reson Med       Date:  2010-07       Impact factor: 4.668

6.  Spatially regularized compressed sensing for high angular resolution diffusion imaging.

Authors:  Oleg Michailovich; Yogesh Rathi; Sudipto Dolui
Journal:  IEEE Trans Med Imaging       Date:  2011-05       Impact factor: 10.048

7.  A nonparametric Riemannian framework for processing high angular resolution diffusion images and its applications to ODF-based morphometry.

Authors:  Alvina Goh; Christophe Lenglet; Paul M Thompson; René Vidal
Journal:  Neuroimage       Date:  2011-02-01       Impact factor: 6.556

8.  On approximation of orientation distributions by means of spherical ridgelets.

Authors:  Oleg Michailovich; Yogesh Rathi
Journal:  IEEE Trans Image Process       Date:  2009-11-03       Impact factor: 10.856

9.  Adaptive kernels for multi-fiber reconstruction.

Authors:  Angelos Barmpoutis; Bing Jian; Baba C Vemuri
Journal:  Inf Process Med Imaging       Date:  2009

10.  Linear transforms for Fourier data on the sphere: application to high angular resolution diffusion MRI of the brain.

Authors:  Justin P Haldar; Richard M Leahy
Journal:  Neuroimage       Date:  2013-01-24       Impact factor: 6.556

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