Literature DB >> 19249235

Directed enzyme evolution: climbing fitness peaks one amino acid at a time.

Cara A Tracewell1, Frances H Arnold.   

Abstract

Directed evolution can generate a remarkable range of new enzyme properties. Alternate substrate specificities and reaction selectivities are readily accessible in enzymes from families that are naturally functionally diverse. Activities on new substrates can be obtained by improving variants with broadened specificities or by step-wise evolution through a sequence of more and more challenging substrates. Evolution of highly specific enzymes has been demonstrated, even with positive selection alone. It is apparent that many solutions exist for any given problem, and there are often many paths that lead uphill, one step at a time.

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Year:  2009        PMID: 19249235      PMCID: PMC2703427          DOI: 10.1016/j.cbpa.2009.01.017

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  51 in total

Review 1.  Natural history as a predictor of protein evolvability.

Authors:  Taryn L O'Loughlin; Wayne M Patrick; Ichiro Matsumura
Journal:  Protein Eng Des Sel       Date:  2006-07-25       Impact factor: 1.650

2.  Identification of critical residues in novel drug metabolizing mutants of cytochrome P450 BM3 using random mutagenesis.

Authors:  Barbara M A van Vugt-Lussenburg; Eva Stjernschantz; Jeroen Lastdrager; Chris Oostenbrink; Nico P E Vermeulen; Jan N M Commandeur
Journal:  J Med Chem       Date:  2007-02-08       Impact factor: 7.446

3.  Diversification of catalytic function in a synthetic family of chimeric cytochrome p450s.

Authors:  Marco Landwehr; Martina Carbone; Christopher R Otey; Yougen Li; Frances H Arnold
Journal:  Chem Biol       Date:  2007-03

4.  Distinct and long-lived activity states of single enzyme molecules.

Authors:  David M Rissin; Hans H Gorris; David R Walt
Journal:  J Am Chem Soc       Date:  2008-03-05       Impact factor: 15.419

5.  An engineered protease that cleaves specifically after sulfated tyrosine.

Authors:  Navin Varadarajan; George Georgiou; Brent L Iverson
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 6.  Steering directed protein evolution: strategies to manage combinatorial complexity of mutant libraries.

Authors:  Tuck Seng Wong; Danilo Roccatano; Ulrich Schwaneberg
Journal:  Environ Microbiol       Date:  2007-11       Impact factor: 5.491

7.  Incorporating Synthetic Oligonucleotides via Gene Reassembly (ISOR): a versatile tool for generating targeted libraries.

Authors:  Asael Herman; Dan S Tawfik
Journal:  Protein Eng Des Sel       Date:  2007-05-05       Impact factor: 1.650

8.  Enhancement of the alcoholytic activity of alpha-amylase AmyA from Thermotoga maritima MSB8 (DSM 3109) by site-directed mutagenesis.

Authors:  Juanita Yazmin Damián-Almazo; Alina Moreno; Agustin López-Munguía; Xavier Soberón; Fernando González-Muñoz; Gloria Saab-Rincón
Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

9.  Engineering proteinase K using machine learning and synthetic genes.

Authors:  Jun Liao; Manfred K Warmuth; Sridhar Govindarajan; Jon E Ness; Rebecca P Wang; Claes Gustafsson; Jeremy Minshull
Journal:  BMC Biotechnol       Date:  2007-03-26       Impact factor: 2.563

10.  Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data.

Authors:  Frank J Poelwijk; Daniel J Kiviet; Sander J Tans
Journal:  PLoS Comput Biol       Date:  2006-05-26       Impact factor: 4.475

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  88 in total

1.  Experimental evolution of a green fluorescent protein composed of 19 unique amino acids without tryptophan.

Authors:  Akio Kawahara-Kobayashi; Mitsuhiro Hitotsuyanagi; Kazuaki Amikura; Daisuke Kiga
Journal:  Orig Life Evol Biosph       Date:  2014-11-16       Impact factor: 1.950

2.  Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates.

Authors:  Ruiqi Huang; Frank Hippauf; Diana Rohrbeck; Maria Haustein; Katrin Wenke; Janie Feike; Noah Sorrelle; Birgit Piechulla; Todd J Barkman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-06       Impact factor: 11.205

Review 3.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

4.  Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.

Authors:  Corwin Miller; Milya Davlieva; Corey Wilson; Kristopher I White; Rafael Couñago; Gang Wu; Jeffrey C Myers; Pernilla Wittung-Stafshede; Yousif Shamoo
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

5.  Thermally denatured state determines refolding in lipase: mutational analysis.

Authors:  Shoeb Ahmad; Nalam Madhusudhana Rao
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

Review 6.  Engineering synthetic recursive pathways to generate non-natural small molecules.

Authors:  Elizabeth A Felnagle; Asha Chaubey; Elizabeth L Noey; Kendall N Houk; James C Liao
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 7.  Engineering the acyltransferase substrate specificity of assembly line polyketide synthases.

Authors:  Briana J Dunn; Chaitan Khosla
Journal:  J R Soc Interface       Date:  2013-05-29       Impact factor: 4.118

8.  Microbial engineering for the production of advanced biofuels.

Authors:  Pamela P Peralta-Yahya; Fuzhong Zhang; Stephen B del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

Review 9.  Directed evolution drives the next generation of biocatalysts.

Authors:  Nicholas J Turner
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

10.  Directed Evolution as a Probe of Rate Promoting Vibrations Introduced via Mutational Change.

Authors:  Xi Chen; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-03-22       Impact factor: 3.162

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