Literature DB >> 17922750

Steering directed protein evolution: strategies to manage combinatorial complexity of mutant libraries.

Tuck Seng Wong1, Danilo Roccatano, Ulrich Schwaneberg.   

Abstract

How to explore protein sequence space efficiently and how to generate high-quality mutant libraries that allow to identify improved variants with current screening technologies are key questions for any directed protein evolution experiment. High-quality mutant libraries can be generated through improved random mutagenesis methodologies and by restricting diversity generation through computational methods to residues which have high success probabilities. Advances in mutant library design and computational tools to focus diversity generation are summarized in this minireview and discussed from an experimentalist point of view in the context of directed protein evolution.

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Year:  2007        PMID: 17922750     DOI: 10.1111/j.1462-2920.2007.01411.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  16 in total

1.  A high-throughput screening method to reengineer DNA polymerases for random mutagenesis.

Authors:  Tsvetan Kardashliev; Anna Joëlle Ruff; Jing Zhao; Ulrich Schwaneberg
Journal:  Mol Biotechnol       Date:  2014-03       Impact factor: 2.695

2.  mRNA display for the selection and evolution of enzymes from in vitro-translated protein libraries.

Authors:  Burckhard Seelig
Journal:  Nat Protoc       Date:  2011-03-31       Impact factor: 13.491

3.  Generation of random mutant libraries with multiple primers in a single reaction.

Authors:  Xiaozhi Lu; Bhavna Hora; Fangping Cai; Feng Gao
Journal:  J Virol Methods       Date:  2010-03-31       Impact factor: 2.014

Review 4.  Directed enzyme evolution: climbing fitness peaks one amino acid at a time.

Authors:  Cara A Tracewell; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2009-02-25       Impact factor: 8.822

5.  Saccharomyces cerevisiae in directed evolution: An efficient tool to improve enzymes.

Authors:  David Gonzalez-Perez; Eva Garcia-Ruiz; Miguel Alcalde
Journal:  Bioeng Bugs       Date:  2012-05-01

6.  Improving the thermostability of alpha-amylase by combinatorial coevolving-site saturation mutagenesis.

Authors:  Chenghua Wang; Ribo Huang; Bingfang He; Qishi Du
Journal:  BMC Bioinformatics       Date:  2012-10-11       Impact factor: 3.169

7.  OmniChange: the sequence independent method for simultaneous site-saturation of five codons.

Authors:  Alexander Dennig; Amol V Shivange; Jan Marienhagen; Ulrich Schwaneberg
Journal:  PLoS One       Date:  2011-10-19       Impact factor: 3.240

8.  A Robust and Versatile Method of Combinatorial Chemical Synthesis of Gene Libraries via Hierarchical Assembly of Partially Randomized Modules.

Authors:  Blagovesta Popova; Steffen Schubert; Ingo Bulla; Daniela Buchwald; Wilfried Kramer
Journal:  PLoS One       Date:  2015-09-10       Impact factor: 3.240

Review 9.  Computer-Aided Protein Directed Evolution: a Review of Web Servers, Databases and other Computational Tools for Protein Engineering.

Authors:  Rajni Verma; Ulrich Schwaneberg; Danilo Roccatano
Journal:  Comput Struct Biotechnol J       Date:  2012-10-22       Impact factor: 7.271

10.  GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries.

Authors:  Andrew E Firth; Wayne M Patrick
Journal:  Nucleic Acids Res       Date:  2008-04-28       Impact factor: 16.971

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