Literature DB >> 19620998

Directed evolution drives the next generation of biocatalysts.

Nicholas J Turner1.   

Abstract

Enzymes are increasingly being used as biocatalysts in the generation of products that have until now been derived using traditional chemical processes. Such products range from pharmaceutical and agrochemical building blocks to fine and bulk chemicals and, more recently, components of biofuels. For a biocatalyst to be effective in an industrial process, it must be subjected to improvement and optimization, and in this respect the directed evolution of enzymes has emerged as a powerful enabling technology. Directed evolution involves repeated rounds of (i) random gene library generation, (ii) expression of genes in a suitable host and (iii) screening of libraries of variant enzymes for the property of interest. Both in vitro screening-based methods and in vivo selection-based methods have been applied to the evolution of enzyme function and properties. Significant developments have occurred recently, particularly with respect to library design, screening methodology, applications in synthetic transformations and strategies for the generation of new enzyme function.

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Year:  2009        PMID: 19620998     DOI: 10.1038/nchembio.203

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  86 in total

Review 1.  Directed evolution of enzymes: new biocatalysts for asymmetric synthesis.

Authors:  Marina Alexeeva; Reuben Carr; Nicholas J Turner
Journal:  Org Biomol Chem       Date:  2003-10-21       Impact factor: 3.876

2.  Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization.

Authors:  Andrew D Griffiths; Dan S Tawfik
Journal:  EMBO J       Date:  2003-01-02       Impact factor: 11.598

Review 3.  Directed evolution of enzymes for product chemistry.

Authors:  Francesca Valetti; Gianfranco Gilardi
Journal:  Nat Prod Rep       Date:  2004-07-15       Impact factor: 13.423

Review 4.  Biocatalysis for pharmaceutical intermediates: the future is now.

Authors:  David J Pollard; John M Woodley
Journal:  Trends Biotechnol       Date:  2006-12-20       Impact factor: 19.536

5.  Catalytic promiscuity of halohydrin dehalogenase and its application in enantioselective epoxide ring opening.

Authors:  Ghannia Hasnaoui-Dijoux; Maja Majerić Elenkov; Jeffrey H Lutje Spelberg; Bernhard Hauer; Dick B Janssen
Journal:  Chembiochem       Date:  2008-05-05       Impact factor: 3.164

6.  Amino acid alphabet size in protein evolution experiments: better to search a small library thoroughly or a large library sparsely?

Authors:  Enrique Muñoz; Michael W Deem
Journal:  Protein Eng Des Sel       Date:  2008-03-28       Impact factor: 1.650

7.  DNA shuffling of a family of genes from diverse species accelerates directed evolution.

Authors:  A Crameri; S A Raillard; E Bermudez; W P Stemmer
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

Review 8.  Mechanisms and structures of crotonase superfamily enzymes--how nature controls enolate and oxyanion reactivity.

Authors:  R B Hamed; E T Batchelar; I J Clifton; C J Schofield
Journal:  Cell Mol Life Sci       Date:  2008-08       Impact factor: 9.261

9.  Selection and evolution of enzymes from a partially randomized non-catalytic scaffold.

Authors:  Burckhard Seelig; Jack W Szostak
Journal:  Nature       Date:  2007-08-16       Impact factor: 49.962

10.  The structure of monoamine oxidase from Aspergillus niger provides a molecular context for improvements in activity obtained by directed evolution.

Authors:  Kate E Atkin; Renate Reiss; Valentin Koehler; Kevin R Bailey; Sam Hart; Johan P Turkenburg; Nicholas J Turner; A Marek Brzozowski; Gideon Grogan
Journal:  J Mol Biol       Date:  2008-10-14       Impact factor: 5.469

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  134 in total

1.  Combinatorial reshaping of the Candida antarctica lipase A substrate pocket for enantioselectivity using an extremely condensed library.

Authors:  Anders G Sandström; Ylva Wikmark; Karin Engström; Jonas Nyhlén; Jan-E Bäckvall
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-16       Impact factor: 11.205

2.  Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: factors contributing to increased activity retention.

Authors:  Wojciech Augustyniak; Agnieszka A Brzezinska; Tjaard Pijning; Hans Wienk; Rolf Boelens; Bauke W Dijkstra; Manfred T Reetz
Journal:  Protein Sci       Date:  2012-02-29       Impact factor: 6.725

3.  Site-directed mutagenesis of a family 42 β-galactosidase from an antarctic bacterium.

Authors:  Matthew V Shumway; Peter P Sheridan
Journal:  Int J Biochem Mol Biol       Date:  2012-05-18

4.  Prospecting metagenomic enzyme subfamily genes for DNA family shuffling by a novel PCR-based approach.

Authors:  Qiuyan Wang; Huili Wu; Anming Wang; Pengfei Du; Xiaolin Pei; Haifeng Li; Xiaopu Yin; Lifeng Huang; Xiaolong Xiong
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

5.  In vivo enzyme immobilization by inclusion body display.

Authors:  Björn Steinmann; Andreas Christmann; Tim Heiseler; Janine Fritz; Harald Kolmar
Journal:  Appl Environ Microbiol       Date:  2010-06-25       Impact factor: 4.792

6.  Rational assignment of key motifs for function guides in silico enzyme identification.

Authors:  Matthias Höhne; Sebastian Schätzle; Helge Jochens; Karen Robins; Uwe T Bornscheuer
Journal:  Nat Chem Biol       Date:  2010-09-26       Impact factor: 15.040

7.  Biochemistry. Reengineering enzymes.

Authors:  Stefan Lutz
Journal:  Science       Date:  2010-07-16       Impact factor: 47.728

8.  Recombinant silicateins as model biocatalysts in organosiloxane chemistry.

Authors:  S Yasin Tabatabaei Dakhili; Stephanie A Caslin; Abayomi S Faponle; Peter Quayle; Sam P de Visser; Lu Shin Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

9.  Enantioselective Total Synthesis of Nigelladine A via Late-Stage C-H Oxidation Enabled by an Engineered P450 Enzyme.

Authors:  Steven A Loskot; David K Romney; Frances H Arnold; Brian M Stoltz
Journal:  J Am Chem Soc       Date:  2017-07-24       Impact factor: 15.419

10.  Directed evolution of glycosyltransferase for enhanced efficiency of avermectin glucosylation.

Authors:  Ha-Young Choi; Hyun Seung Lim; Kwang-Hyun Park; Junheon Kim; Won-Gon Kim
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-27       Impact factor: 4.813

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