Literature DB >> 19242093

Intracellular trafficking and dynamics of P bodies.

Adva Aizer1, Yaron Shav-Tal.   

Abstract

RNAs are exported from the nucleus to the cytoplasm, where they undergo translation and produce proteins needed for the cellular life cycle. Some mRNAs are targeted by different RNA decay mechanisms and thereby undergo degradation. The 5'-->3' degradation machinery localizes to cytoplasmic complexes termed P bodies (PBs). They function in RNA turnover, translational repression, RNA-mediated silencing, and RNA storage. A quantitative live-cell imaging approach to study the dynamic aspects of PB trafficking in the cytoplasm revealed that PB movements are rather confined and dependent on an existing microtubule network. Microtubule depolymerization led to a drastic decrease in PB mobility, as well as a release of regulation on PB assembly and a dramatic increase in PB numbers. The different aspects of PB trafficking and encounters with mRNA molecules in the cytoplasm are discussed.

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Year:  2008        PMID: 19242093      PMCID: PMC2658761          DOI: 10.4161/pri.2.4.7773

Source DB:  PubMed          Journal:  Prion        ISSN: 1933-6896            Impact factor:   3.931


  36 in total

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Authors:  K Luby-Phelps
Journal:  Int Rev Cytol       Date:  2000

Review 2.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

3.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

4.  The role of GW/P-bodies in RNA processing and silencing.

Authors:  Andrew Jakymiw; Kaleb M Pauley; Songqing Li; Keigo Ikeda; Shangli Lian; Theophany Eystathioy; Minoru Satoh; Marvin J Fritzler; Edward K L Chan
Journal:  J Cell Sci       Date:  2007-04-15       Impact factor: 5.285

Review 5.  P bodies and the control of mRNA translation and degradation.

Authors:  Roy Parker; Ujwal Sheth
Journal:  Mol Cell       Date:  2007-03-09       Impact factor: 17.970

6.  Dynamic interaction between P-bodies and transport ribonucleoprotein particles in dendrites of mature hippocampal neurons.

Authors:  Manuel Zeitelhofer; Daniela Karra; Paolo Macchi; Marco Tolino; Sabine Thomas; Martina Schwarz; Michael Kiebler; Ralf Dahm
Journal:  J Neurosci       Date:  2008-07-23       Impact factor: 6.167

7.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

8.  Microtubule disruption stimulates P-body formation.

Authors:  Thomas J Sweet; Brooke Boyer; Wenqian Hu; Kristian E Baker; Jeff Coller
Journal:  RNA       Date:  2007-02-16       Impact factor: 4.942

9.  The dynamics of mammalian P body transport, assembly, and disassembly in vivo.

Authors:  Adva Aizer; Yehuda Brody; Lian Wee Ler; Nahum Sonenberg; Robert H Singer; Yaron Shav-Tal
Journal:  Mol Biol Cell       Date:  2008-07-23       Impact factor: 4.138

10.  Inhibition of nonsense-mediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies.

Authors:  Sébastien Durand; Nicolas Cougot; Florence Mahuteau-Betzer; Chi-Hung Nguyen; David S Grierson; Edouard Bertrand; Jamal Tazi; Fabrice Lejeune
Journal:  J Cell Biol       Date:  2007-09-24       Impact factor: 10.539

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  15 in total

1.  MicroRNA Expression and Correlation with mRNA Levels of Colorectal Cancer-Related Genes.

Authors:  Farahnaz Moghadamnia; Pegah Ghoraeian; Sara Minaeian; Atefeh Talebi; Farnaz Farsi; Abolfazl Akbari
Journal:  J Gastrointest Cancer       Date:  2020-03

2.  Are assumptions about the model type necessary in reaction-diffusion modeling? A FRAP application.

Authors:  Juliane Mai; Saskia Trump; Rizwan Ali; R Louis Schiltz; Gordon Hager; Thomas Hanke; Irina Lehmann; Sabine Attinger
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

3.  Unraveling regulation and new components of human P-bodies through a protein interaction framework and experimental validation.

Authors:  Dinghai Zheng; Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  RNA       Date:  2011-07-12       Impact factor: 4.942

4.  Looking for the functions of RNA granules in ALK-transformed cells.

Authors:  Mohamad Fawal; Estelle Espinos; Olivier Jean-Jean; Dominique Morello
Journal:  Bioarchitecture       Date:  2011-03

5.  mRNA decapping enzyme 1a (Dcp1a)-induced translational arrest through protein kinase R (PKR) activation requires the N-terminal enabled vasodilator-stimulated protein homology 1 (EVH1) domain.

Authors:  Jonathan D Dougherty; Lucas C Reineke; Richard E Lloyd
Journal:  J Biol Chem       Date:  2013-12-31       Impact factor: 5.157

6.  Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI).

Authors:  Maria Elena Gallina; Jianmin Xu; Thomas Dertinger; Adva Aizer; Yaron Shav-Tal; Shimon Weiss
Journal:  Opt Nanoscopy       Date:  2013-02-25

Review 7.  Can we observe changes in mRNA "state"? Overview of methods to study mRNA interactions with regulatory proteins relevant in cancer related processes.

Authors:  C Zurla; J Jung; P J Santangelo
Journal:  Analyst       Date:  2016-01-21       Impact factor: 4.616

8.  The role of stress-activated RNA-protein granules in surviving adversity.

Authors:  Leah E Escalante; Audrey P Gasch
Journal:  RNA       Date:  2021-04-30       Impact factor: 4.942

9.  mRNA decay proteins are targeted to poly(A)+ RNA and dsRNA-containing cytoplasmic foci that resemble P-bodies in Entamoeba histolytica.

Authors:  Itzel López-Rosas; Esther Orozco; Laurence A Marchat; Guillermina García-Rivera; Nancy Guillen; Christian Weber; Eduardo Carrillo-Tapia; Olga Hernández de la Cruz; Carlos Pérez-Plasencia; César López-Camarillo
Journal:  PLoS One       Date:  2012-09-24       Impact factor: 3.240

10.  The P body protein Dcp1a is hyper-phosphorylated during mitosis.

Authors:  Adva Aizer; Pinhas Kafri; Alon Kalo; Yaron Shav-Tal
Journal:  PLoS One       Date:  2013-01-02       Impact factor: 3.240

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