Literature DB >> 18653466

The dynamics of mammalian P body transport, assembly, and disassembly in vivo.

Adva Aizer1, Yehuda Brody, Lian Wee Ler, Nahum Sonenberg, Robert H Singer, Yaron Shav-Tal.   

Abstract

Exported mRNAs are targeted for translation or can undergo degradation by several decay mechanisms. The 5'-->3' degradation machinery localizes to cytoplasmic P bodies (PBs). We followed the dynamic properties of PBs in vivo and investigated the mechanism by which PBs scan the cytoplasm. Using proteins of the decapping machinery, we asked whether PBs actively scan the cytoplasm or whether a diffusion-based mechanism is sufficient. Live-cell imaging showed that PBs were anchored mainly to microtubules. Quantitative single-particle tracking demonstrated that most PBs exhibited spatially confined motion dependent on microtubule motion, whereas stationary PB pairs were identified at the centrosome. Some PBs translocated in long-range movements on microtubules. PB mobility was compared with mitochondria, endoplasmic reticulum, peroxisomes, SMN bodies, and stress granules, and diffusion coefficients were calculated. Disruption of the microtubule network caused a significant reduction in PB mobility together with an induction of PB assembly. However, FRAP measurements showed that the dynamic flux of assembled PB components was not affected by such treatments. FRAP analysis showed that the decapping enzyme Dcp2 is a nondynamic PB core protein, whereas Dcp1 proteins continuously exchanged with the cytoplasm. This study reveals the mechanism of PB transport, and it demonstrates how PB assembly and disassembly integrate with the presence of an intact cytoskeleton.

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Year:  2008        PMID: 18653466      PMCID: PMC2555939          DOI: 10.1091/mbc.e08-05-0513

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  56 in total

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Authors:  Yaron Shav-Tal; Janna Blechman; Xavier Darzacq; Cristina Montagna; Billy T Dye; James G Patton; Robert H Singer; Dov Zipori
Journal:  Mol Biol Cell       Date:  2005-03-09       Impact factor: 4.138

2.  Processing bodies require RNA for assembly and contain nontranslating mRNAs.

Authors:  Daniela Teixeira; Ujwal Sheth; Marco A Valencia-Sanchez; Muriel Brengues; Roy Parker
Journal:  RNA       Date:  2005-02-09       Impact factor: 4.942

Review 3.  Messenger RNA turnover in eukaryotes: pathways and enzymes.

Authors:  Sylke Meyer; Claudia Temme; Elmar Wahle
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Jul-Aug       Impact factor: 8.250

4.  Neuronal peptide release is limited by secretory granule mobility.

Authors:  N V Burke; W Han; D Li; K Takimoto; S C Watkins; E S Levitan
Journal:  Neuron       Date:  1997-11       Impact factor: 17.173

5.  Visualization of single RNA transcripts in situ.

Authors:  A M Femino; F S Fay; K Fogarty; R H Singer
Journal:  Science       Date:  1998-04-24       Impact factor: 47.728

Review 6.  Single-particle tracking: applications to membrane dynamics.

Authors:  M J Saxton; K Jacobson
Journal:  Annu Rev Biophys Biomol Struct       Date:  1997

7.  The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif.

Authors:  T Dunckley; R Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

8.  A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies.

Authors:  Maria Alexandra Andrei; Dierk Ingelfinger; Rainer Heintzmann; Tilmann Achsel; Rolando Rivera-Pomar; Reinhard Lührmann
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

9.  An essential component of the decapping enzyme required for normal rates of mRNA turnover.

Authors:  C A Beelman; A Stevens; G Caponigro; T E LaGrandeur; L Hatfield; D M Fortner; R Parker
Journal:  Nature       Date:  1996-08-15       Impact factor: 49.962

10.  A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates.

Authors:  V I Bashkirov; H Scherthan; J A Solinger; J M Buerstedde; W D Heyer
Journal:  J Cell Biol       Date:  1997-02-24       Impact factor: 10.539

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  109 in total

1.  Intracellular single molecule microscopy reveals two kinetically distinct pathways for microRNA assembly.

Authors:  Sethuramasundaram Pitchiaya; John R Androsavich; Nils G Walter
Journal:  EMBO Rep       Date:  2012-06-12       Impact factor: 8.807

2.  The life of an mRNA in space and time.

Authors:  Ya'ara Ben-Ari; Yehuda Brody; Noa Kinor; Amir Mor; Toshiro Tsukamoto; David L Spector; Robert H Singer; Yaron Shav-Tal
Journal:  J Cell Sci       Date:  2010-04-27       Impact factor: 5.285

Review 3.  Viral activation of stress-regulated Rho-GTPase signaling pathway disrupts sites of mRNA degradation to influence cellular gene expression.

Authors:  Jennifer A Corcoran; Craig McCormick
Journal:  Small GTPases       Date:  2015-10-19

4.  Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI).

Authors:  Maria Elena Gallina; Jianmin Xu; Thomas Dertinger; Adva Aizer; Yaron Shav-Tal; Shimon Weiss
Journal:  Opt Nanoscopy       Date:  2013-02-25

5.  Microtubule-dependent association of AKAP350A and CCAR1 with RNA stress granules.

Authors:  Elena Kolobova; Andrey Efimov; Irina Kaverina; Arun K Rishi; John W Schrader; Amy-Joan Ham; M Cecilia Larocca; James R Goldenring
Journal:  Exp Cell Res       Date:  2008-12-03       Impact factor: 3.905

6.  Processing-body movement in Arabidopsis depends on an interaction between myosins and DECAPPING PROTEIN1.

Authors:  Alexandra Steffens; Benjamin Jaegle; Achim Tresch; Martin Hülskamp; Marc Jakoby
Journal:  Plant Physiol       Date:  2014-02-13       Impact factor: 8.340

7.  Genetic variants in the PIWI-piRNA pathway gene DCP1A predict melanoma disease-specific survival.

Authors:  Weikang Zhang; Hongliang Liu; Jieyun Yin; Wenting Wu; Dakai Zhu; Christopher I Amos; Shenying Fang; Jeffrey E Lee; Yi Li; Jiali Han; Qingyi Wei
Journal:  Int J Cancer       Date:  2016-09-14       Impact factor: 7.396

Review 8.  Relationship of GW/P-bodies with stress granules.

Authors:  Georg Stoecklin; Nancy Kedersha
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 9.  Quantifying Argonaute proteins in and out of GW/P-bodies: implications in microRNA activities.

Authors:  Anthony K L Leung; Phillip A Sharp
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

10.  Cytoplasmic RNA Granules and Viral Infection.

Authors:  Wei-Chih Tsai; Richard E Lloyd
Journal:  Annu Rev Virol       Date:  2014-11       Impact factor: 10.431

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