Literature DB >> 19240131

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

Takayuki Katoh1, Yuriko Sakaguchi, Kenjyo Miyauchi, Takeo Suzuki, Shin-Ichi Kashiwabara, Tadashi Baba, Tsutomu Suzuki.   

Abstract

The steady-state levels of microRNAs (miRNAs) and their activities are regulated by the post-transcriptional processes. It is known that 3' ends of several miRNAs undergo post-dicing adenylation or uridylation. We isolated the liver-specific miR-122 from human hepatocytes and mouse livers. Direct analysis by mass spectrometry revealed that one variant of miR-122 has a 3'-terminal adenosine that is introduced after processing by Dicer. We identified GLD-2, which is a regulatory cytoplasmic poly(A) polymerase, as responsible for the 3'-terminal adenylation of miR-122 after unwinding of the miR-122/miR-122* duplex. In livers from GLD-2-null mice, the steady-state level of the mature form of miR-122 was specifically lower than in heterozygous mice, whereas no reduction of pre-miR-122 was observed, demonstrating that 3'-terminal adenylation by GLD-2 is required for the selective stabilization of miR-122 in the liver.

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Year:  2009        PMID: 19240131      PMCID: PMC2648654          DOI: 10.1101/gad.1761509

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  47 in total

1.  Effect of 3' terminal adenylic acid residue on the uridylation of human small RNAs in vitro and in frog oocytes.

Authors:  Y Chen; K Sinha; K Perumal; R Reddy
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

2.  Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.

Authors:  Shigeaki Saitoh; Andrei Chabes; W Hayes McDonald; Lars Thelander; John R Yates; Paul Russell
Journal:  Cell       Date:  2002-05-31       Impact factor: 41.582

3.  Vertebrate GLD2 poly(A) polymerases in the germline and the brain.

Authors:  Labib Rouhana; Liaoteng Wang; Natascha Buter; Jae Eun Kwak; Craig A Schiltz; Tania Gonzalez; Ann E Kelley; Charles F Landry; Marvin Wickens
Journal:  RNA       Date:  2005-07       Impact factor: 4.942

4.  A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans.

Authors:  Liaoteng Wang; Christian R Eckmann; Lisa C Kadyk; Marvin Wickens; Judith Kimble
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

5.  Disruption of mouse poly(A) polymerase mGLD-2 does not alter polyadenylation status in oocytes and somatic cells.

Authors:  Tomoko Nakanishi; Satoshi Kumagai; Masanori Kimura; Hiromi Watanabe; Takayuki Sakurai; Minoru Kimura; Shin-ichi Kashiwabara; Tadashi Baba
Journal:  Biochem Biophys Res Commun       Date:  2007-10-01       Impact factor: 3.575

6.  A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment.

Authors:  Agnieszka Rybak; Heiko Fuchs; Lena Smirnova; Christine Brandt; Elena E Pohl; Robert Nitsch; F Gregory Wulczyn
Journal:  Nat Cell Biol       Date:  2008-07-06       Impact factor: 28.824

7.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

8.  Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method.

Authors:  Kenjyo Miyauchi; Tomoya Ohara; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2007-01-23       Impact factor: 16.971

9.  Specific residues at every third position of siRNA shape its efficient RNAi activity.

Authors:  Takayuki Katoh; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2007-01-26       Impact factor: 16.971

10.  Methylation as a crucial step in plant microRNA biogenesis.

Authors:  Bin Yu; Zhiyong Yang; Junjie Li; Svetlana Minakhina; Maocheng Yang; Richard W Padgett; Ruth Steward; Xuemei Chen
Journal:  Science       Date:  2005-02-11       Impact factor: 47.728

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  210 in total

Review 1.  miRNA profiling for biomarker discovery in multiple sclerosis: from microarray to deep sequencing.

Authors:  Mireia Guerau-de-Arellano; Hansjuerg Alder; Hatice Gulcin Ozer; Amy Lovett-Racke; Michael K Racke
Journal:  J Neuroimmunol       Date:  2011-11-09       Impact factor: 3.478

2.  Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae.

Authors:  Akiko Noma; Sanghyun Yi; Takayuki Katoh; Yoshimi Takai; Takeo Suzuki; Tsutomu Suzuki
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

3.  Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs.

Authors:  Jakub O Westholm; Erik Ladewig; Katsutomo Okamura; Nicolas Robine; Eric C Lai
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

4.  The enemy within: intronic miR-26b represses its host gene, ctdsp2, to regulate neurogenesis.

Authors:  Jinju Han; Ahmet M Denli; Fred H Gage
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

5.  Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships.

Authors:  Li Guo; Hailing Li; Tingming Liang; Jiafeng Lu; Qi Yang; Qinyu Ge; Zuhong Lu
Journal:  Mol Biol Rep       Date:  2012-03-06       Impact factor: 2.316

6.  Transcriptome-wide analysis of small RNA expression in early zebrafish development.

Authors:  Chunyao Wei; Leonidas Salichos; Carli M Wittgrove; Antonis Rokas; James G Patton
Journal:  RNA       Date:  2012-03-08       Impact factor: 4.942

Review 7.  Regulation of small RNA stability: methylation and beyond.

Authors:  Lijuan Ji; Xuemei Chen
Journal:  Cell Res       Date:  2012-03-13       Impact factor: 25.617

Review 8.  The regulatory activities of plant microRNAs: a more dynamic perspective.

Authors:  Yijun Meng; Chaogang Shao; Huizhong Wang; Ming Chen
Journal:  Plant Physiol       Date:  2011-10-14       Impact factor: 8.340

9.  Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs.

Authors:  Takeshi Chujo; Tsutomu Suzuki
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

10.  Gld2 activity is regulated by phosphorylation in the N-terminal domain.

Authors:  Christina Z Chung; Nileeka Balasuriya; Emad Manni; Xuguang Liu; Shawn Shun-Cheng Li; Patrick O'Donoghue; Ilka U Heinemann
Journal:  RNA Biol       Date:  2019-05-05       Impact factor: 4.652

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