Literature DB >> 19225515

Molecular biology: The long and short of RNAs.

Piero Carninci.   

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Year:  2009        PMID： 19225515     DOI： 10.1038/457974b

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  13 in total

1.  Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae.

Authors:  Jurgi Camblong; Nahid Iglesias; Céline Fickentscher; Guennaelle Dieppois; Françoise Stutz
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

2.  RNA maps reveal new RNA classes and a possible function for pervasive transcription.

Authors:  Philipp Kapranov; Jill Cheng; Sujit Dike; David A Nix; Radharani Duttagupta; Aarron T Willingham; Peter F Stadler; Jana Hertel; Jörg Hackermüller; Ivo L Hofacker; Ian Bell; Evelyn Cheung; Jorg Drenkow; Erica Dumais; Sandeep Patel; Gregg Helt; Madhavan Ganesh; Srinka Ghosh; Antonio Piccolboni; Victor Sementchenko; Hari Tammana; Thomas R Gingeras
Journal:  Science       Date:  2007-05-17       Impact factor: 47.728

3.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

Review 4.  Multifaceted mammalian transcriptome.

Authors:  Piero Carninci; Jun Yasuda; Yoshihide Hayashizaki
Journal:  Curr Opin Cell Biol       Date:  2008-05-28       Impact factor: 8.382

5.  Genome-wide analysis of mammalian promoter architecture and evolution.

Authors:  Piero Carninci; Albin Sandelin; Boris Lenhard; Shintaro Katayama; Kazuro Shimokawa; Jasmina Ponjavic; Colin A M Semple; Martin S Taylor; Pär G Engström; Martin C Frith; Alistair R R Forrest; Wynand B Alkema; Sin Lam Tan; Charles Plessy; Rimantas Kodzius; Timothy Ravasi; Takeya Kasukawa; Shiro Fukuda; Mutsumi Kanamori-Katayama; Yayoi Kitazume; Hideya Kawaji; Chikatoshi Kai; Mari Nakamura; Hideaki Konno; Kenji Nakano; Salim Mottagui-Tabar; Peter Arner; Alessandra Chesi; Stefano Gustincich; Francesca Persichetti; Harukazu Suzuki; Sean M Grimmond; Christine A Wells; Valerio Orlando; Claes Wahlestedt; Edison T Liu; Matthias Harbers; Jun Kawai; Vladimir B Bajic; David A Hume; Yoshihide Hayashizaki
Journal:  Nat Genet       Date:  2006-04-28       Impact factor: 38.330

Review 6.  5'-terminal cap structure in eucaryotic messenger ribonucleic acids.

Authors:  A K Banerjee
Journal:  Microbiol Rev       Date:  1980-06

7.  Divergent transcription from active promoters.

Authors:  Amy C Seila; J Mauro Calabrese; Stuart S Levine; Gene W Yeo; Peter B Rahl; Ryan A Flynn; Richard A Young; Phillip A Sharp
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

8.  Bidirectional promoters generate pervasive transcription in yeast.

Authors:  Zhenyu Xu; Wu Wei; Julien Gagneur; Fabiana Perocchi; Sandra Clauder-Münster; Jurgi Camblong; Elisa Guffanti; Françoise Stutz; Wolfgang Huber; Lars M Steinmetz
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

9.  Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.

Authors: 
Journal:  Nature       Date:  2009-01-25       Impact factor: 49.962

10.  Complex Loci in human and mouse genomes.

Authors:  Pär G Engström; Harukazu Suzuki; Noriko Ninomiya; Altuna Akalin; Luca Sessa; Giovanni Lavorgna; Alessandro Brozzi; Lucilla Luzi; Sin Lam Tan; Liang Yang; Galih Kunarso; Edwin Lian-Chong Ng; Serge Batalov; Claes Wahlestedt; Chikatoshi Kai; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki; Christine Wells; Vladimir B Bajic; Valerio Orlando; James F Reid; Boris Lenhard; Leonard Lipovich
Journal:  PLoS Genet       Date:  2006-04-28       Impact factor: 5.917
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  23 in total

1.  Systems biology unlimited.

Authors: 
Journal:  Nat Genet       Date:  2009-05       Impact factor: 38.330

2.  Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer.

Authors:  Lei Nie; Hsing-Ju Wu; Jung-Mao Hsu; Shih-Shin Chang; Adam M Labaff; Chia-Wei Li; Yan Wang; Jennifer L Hsu; Mien-Chie Hung
Journal:  Am J Transl Res       Date:  2012-04-08       Impact factor: 4.060

Review 3.  The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs.

Authors:  Alain Jacquier
Journal:  Nat Rev Genet       Date:  2009-12       Impact factor: 53.242

Review 4.  Unravelling the means to an end: RNA polymerase II transcription termination.

Authors:  Jason N Kuehner; Erika L Pearson; Claire Moore
Journal:  Nat Rev Mol Cell Biol       Date:  2011-04-13       Impact factor: 94.444

5.  Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae.

Authors:  Brett N Tomson; Christopher P Davis; Marcie H Warner; Karen M Arndt
Journal:  Genetics       Date:  2011-03-24       Impact factor: 4.562

Review 6.  Regulation of primary response genes.

Authors:  Trent Fowler; Ranjan Sen; Ananda L Roy
Journal:  Mol Cell       Date:  2011-11-04       Impact factor: 17.970

7.  H3K4 trimethylation by Set1 promotes efficient termination by the Nrd1-Nab3-Sen1 pathway.

Authors:  Nihal Terzi; L Stirling Churchman; Lidia Vasiljeva; Jonathan Weissman; Stephen Buratowski
Journal:  Mol Cell Biol       Date:  2011-06-27       Impact factor: 4.272

8.  In planta proteomics and proteogenomics of the biotrophic barley fungal pathogen Blumeria graminis f. sp. hordei.

Authors:  Laurence V Bindschedler; Timothy A Burgis; Davinia J S Mills; Jenny T C Ho; Rainer Cramer; Pietro D Spanu
Journal:  Mol Cell Proteomics       Date:  2009-07-14       Impact factor: 5.911

9.  Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.

Authors:  Charles Plessy; Nicolas Bertin; Hazuki Takahashi; Roberto Simone; Md Salimullah; Timo Lassmann; Morana Vitezic; Jessica Severin; Signe Olivarius; Dejan Lazarevic; Nadine Hornig; Valerio Orlando; Ian Bell; Hui Gao; Jacqueline Dumais; Philipp Kapranov; Huaien Wang; Carrie A Davis; Thomas R Gingeras; Jun Kawai; Carsten O Daub; Yoshihide Hayashizaki; Stefano Gustincich; Piero Carninci
Journal:  Nat Methods       Date:  2010-06-13       Impact factor: 28.547

Review 10.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970
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