Literature DB >> 21487437

Unravelling the means to an end: RNA polymerase II transcription termination.

Jason N Kuehner1, Erika L Pearson, Claire Moore.   

Abstract

The pervasiveness of RNA synthesis in eukaryotes is largely the result of RNA polymerase II (Pol II)-mediated transcription, and termination of its activity is necessary to partition the genome and maintain the proper expression of neighbouring genes. Despite its ever-increasing biological significance, transcription termination remains one of the least understood processes in gene expression. However, recent mechanistic studies have revealed a striking convergence among several overlapping models of termination, including the poly(A)- and Sen1-dependent pathways, as well as new insights into the specificity of Pol II termination among its diverse gene targets. Broader knowledge of the role of Pol II carboxy-terminal domain phosphorylation in promoting alternative mechanisms of termination has also been gained.

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Year:  2011        PMID: 21487437      PMCID: PMC6995273          DOI: 10.1038/nrm3098

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  139 in total

Review 1.  Transcript Elongation by RNA Polymerase II.

Authors:  Luke A Selth; Stefan Sigurdsson; Jesper Q Svejstrup
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

2.  Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination.

Authors:  Alexandre Teixeira; Abdessamad Tahiri-Alaoui; Steve West; Benjamin Thomas; Aroul Ramadass; Igor Martianov; Mick Dye; William James; Nick J Proudfoot; Alexandre Akoulitchev
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

Review 3.  Transcriptional interference--a crash course.

Authors:  Keith E Shearwin; Benjamin P Callen; J Barry Egan
Journal:  Trends Genet       Date:  2005-06       Impact factor: 11.639

4.  CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11.

Authors:  Zhiqiang Zhang; Jianhua Fu; David S Gilmour
Journal:  Genes Dev       Date:  2005-07-01       Impact factor: 11.361

5.  The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes.

Authors:  Eduard Nedea; Demet Nalbant; Daniel Xia; Nathaniel T Theoharis; Bernhard Suter; Charles J Richardson; Kelly Tatchell; Thomas Kislinger; Jack F Greenblatt; Peter L Nagy
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

6.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

7.  The CTD code.

Authors:  Stephen Buratowski
Journal:  Nat Struct Biol       Date:  2003-09

Review 8.  Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs.

Authors:  A Gregory Matera; Rebecca M Terns; Michael P Terns
Journal:  Nat Rev Mol Cell Biol       Date:  2007-03       Impact factor: 94.444

9.  Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain.

Authors:  Bradley M Lunde; Steve L Reichow; Minkyu Kim; Hyunsuk Suh; Thomas C Leeper; Fan Yang; Hannes Mutschler; Stephen Buratowski; Anton Meinhart; Gabriele Varani
Journal:  Nat Struct Mol Biol       Date:  2010-09-05       Impact factor: 15.369

10.  Structural and biochemical studies of the 5'→3' exoribonuclease Xrn1.

Authors:  Jeong Ho Chang; Song Xiang; Kehui Xiang; James L Manley; Liang Tong
Journal:  Nat Struct Mol Biol       Date:  2011-02-06       Impact factor: 15.369

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  129 in total

1.  Prolonged α-amanitin treatment of cells for studying mutated polymerases causes degradation of DSIF160 and other proteins.

Authors:  David C Tsao; Noh Jin Park; Anita Nag; Harold G Martinson
Journal:  RNA       Date:  2011-12-22       Impact factor: 4.942

Review 2.  CHD chromatin remodelers and the transcription cycle.

Authors:  Magdalena Murawska; Alexander Brehm
Journal:  Transcription       Date:  2011-11-01

3.  The yeast RPL9B gene is regulated by modulation between two modes of transcription termination.

Authors:  Rajani Kanth Gudipati; Helen Neil; Frank Feuerbach; Christophe Malabat; Alain Jacquier
Journal:  EMBO J       Date:  2012-04-13       Impact factor: 11.598

4.  Plasma membrane associated transcription of cytoplasmic DNA.

Authors:  Julong Cheng; Ali Torkamani; Yingjie Peng; Teresa M Jones; Richard A Lerner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

5.  Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing.

Authors:  Nuttara Jamonnak; Tyler J Creamer; Miranda M Darby; Paul Schaughency; Sarah J Wheelan; Jeffry L Corden
Journal:  RNA       Date:  2011-09-27       Impact factor: 4.942

6.  Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle.

Authors:  Zhuo Ma; David Atencio; Cassandra Barnes; Holland DeFiglio; Steven D Hanes
Journal:  Mol Cell Biol       Date:  2012-07-09       Impact factor: 4.272

7.  Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition.

Authors:  Nova Fong; Kristopher Brannan; Benjamin Erickson; Hyunmin Kim; Michael A Cortazar; Ryan M Sheridan; Tram Nguyen; Shai Karp; David L Bentley
Journal:  Mol Cell       Date:  2015-10-15       Impact factor: 17.970

8.  In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.

Authors:  Odil Porrua; Fruzsina Hobor; Jocelyne Boulay; Karel Kubicek; Yves D'Aubenton-Carafa; Rajani Kanth Gudipati; Richard Stefl; Domenico Libri
Journal:  EMBO J       Date:  2012-08-28       Impact factor: 11.598

Review 9.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23

10.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

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