Literature DB >> 19223927

Mapping complex disease traits with global gene expression.

William Cookson1, Liming Liang, Gonçalo Abecasis, Miriam Moffatt, Mark Lathrop.   

Abstract

Variation in gene expression is an important mechanism underlying susceptibility to complex disease. The simultaneous genome-wide assay of gene expression and genetic variation allows the mapping of the genetic factors that underpin individual differences in quantitative levels of expression (expression QTLs; eQTLs). The availability of systematically generated eQTL information could provide immediate insight into a biological basis for disease associations identified through genome-wide association (GWA) studies, and can help to identify networks of genes involved in disease pathogenesis. Although there are limitations to current eQTL maps, understanding of disease will be enhanced with novel technologies and international efforts that extend to a wide range of new samples and tissues.

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Year:  2009        PMID: 19223927      PMCID: PMC4550035          DOI: 10.1038/nrg2537

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  108 in total

1.  A genome-wide association study of global gene expression.

Authors:  Anna L Dixon; Liming Liang; Miriam F Moffatt; Wei Chen; Simon Heath; Kenny C C Wong; Jenny Taylor; Edward Burnett; Ivo Gut; Martin Farrall; G Mark Lathrop; Gonçalo R Abecasis; William O C Cookson
Journal:  Nat Genet       Date:  2007-09-16       Impact factor: 38.330

2.  Effect of 17q21 variants and smoking exposure in early-onset asthma.

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Journal:  N Engl J Med       Date:  2008-10-15       Impact factor: 91.245

3.  A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.

Authors:  Maria Chiara Di Bernardo; Dalemari Crowther-Swanepoel; Peter Broderick; Emily Webb; Gabrielle Sellick; Ruth Wild; Kate Sullivan; Jayaram Vijayakrishnan; Yufei Wang; Alan M Pittman; Nicola J Sunter; Andrew G Hall; Martin J S Dyer; Estella Matutes; Claire Dearden; Tryfonia Mainou-Fowler; Graham H Jackson; Geoffrey Summerfield; Robert J Harris; Andrew R Pettitt; Peter Hillmen; David J Allsup; James R Bailey; Guy Pratt; Chris Pepper; Chris Fegan; James M Allan; Daniel Catovsky; Richard S Houlston
Journal:  Nat Genet       Date:  2008-08-31       Impact factor: 38.330

4.  Many sequence variants affecting diversity of adult human height.

Authors:  Daniel F Gudbjartsson; G Bragi Walters; Gudmar Thorleifsson; Hreinn Stefansson; Bjarni V Halldorsson; Pasha Zusmanovich; Patrick Sulem; Steinunn Thorlacius; Arnaldur Gylfason; Stacy Steinberg; Anna Helgadottir; Andres Ingason; Valgerdur Steinthorsdottir; Elinborg J Olafsdottir; Gudridur H Olafsdottir; Thorvaldur Jonsson; Knut Borch-Johnsen; Torben Hansen; Gitte Andersen; Torben Jorgensen; Oluf Pedersen; Katja K Aben; J Alfred Witjes; Dorine W Swinkels; Martin den Heijer; Barbara Franke; Andre L M Verbeek; Diane M Becker; Lisa R Yanek; Lewis C Becker; Laufey Tryggvadottir; Thorunn Rafnar; Jeffrey Gulcher; Lambertus A Kiemeney; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2008-04-06       Impact factor: 38.330

Review 5.  Molecular interactions on microarrays.

Authors:  E Southern; K Mir; M Shchepinov
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

Review 6.  Human type 1 diabetes and the insulin gene: principles of mapping polygenes.

Authors:  S T Bennett; J A Todd
Journal:  Annu Rev Genet       Date:  1996       Impact factor: 16.830

7.  Differences in risk of Crohn's disease in offspring of mothers and fathers with inflammatory bowel disease.

Authors:  P N Akolkar; B Gulwani-Akolkar; D Heresbach; X Y Lin; S Fisher; S Katz; J Silver
Journal:  Am J Gastroenterol       Date:  1997-12       Impact factor: 10.864

8.  Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

Authors:  Geoffrey Hom; Robert R Graham; Barmak Modrek; Kimberly E Taylor; Ward Ortmann; Sophie Garnier; Annette T Lee; Sharon A Chung; Ricardo C Ferreira; P V Krishna Pant; Dennis G Ballinger; Roman Kosoy; F Yesim Demirci; M Ilyas Kamboh; Amy H Kao; Chao Tian; Iva Gunnarsson; Anders A Bengtsson; Solbritt Rantapää-Dahlqvist; Michelle Petri; Susan Manzi; Michael F Seldin; Lars Rönnblom; Ann-Christine Syvänen; Lindsey A Criswell; Peter K Gregersen; Timothy W Behrens
Journal:  N Engl J Med       Date:  2008-01-20       Impact factor: 91.245

9.  A novel susceptibility locus for type 1 diabetes on Chr12q13 identified by a genome-wide association study.

Authors:  Hakon Hakonarson; Hui-Qi Qu; Jonathan P Bradfield; Luc Marchand; Cecilia E Kim; Joseph T Glessner; Rosemarie Grabs; Tracy Casalunovo; Shayne P Taback; Edward C Frackelton; Andrew W Eckert; Kiran Annaiah; Margaret L Lawson; F George Otieno; Erin Santa; Julie L Shaner; Ryan M Smith; Chioma C Onyiah; Robert Skraban; Rosetta M Chiavacci; Luke J Robinson; Charles A Stanley; Susan E Kirsch; Marcella Devoto; Dimitri S Monos; Struan F A Grant; Constantin Polychronakos
Journal:  Diabetes       Date:  2008-01-15       Impact factor: 9.461

Review 10.  The genetic dissection of immune response using gene-expression studies and genome mapping.

Authors:  Dirk-Jan de Koning; Orjan Carlborg; Chris S Haley
Journal:  Vet Immunol Immunopathol       Date:  2005-05-15       Impact factor: 2.046

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  388 in total

1.  Genetic control of gene expression in whole blood and lymphoblastoid cell lines is largely independent.

Authors:  Joseph E Powell; Anjali K Henders; Allan F McRae; Margaret J Wright; Nicholas G Martin; Emmanouil T Dermitzakis; Grant W Montgomery; Peter M Visscher
Journal:  Genome Res       Date:  2011-12-19       Impact factor: 9.043

2.  Cell type-specific eQTLs in the human immune system.

Authors:  Peter K Gregersen
Journal:  Nat Genet       Date:  2012-04-26       Impact factor: 38.330

3.  Expression QTL analysis of top loci from GWAS meta-analysis highlights additional schizophrenia candidate genes.

Authors:  Simone de Jong; Kristel R van Eijk; Dave W L H Zeegers; Eric Strengman; Esther Janson; Jan H Veldink; Leonard H van den Berg; Wiepke Cahn; René S Kahn; Marco P M Boks; Roel A Ophoff
Journal:  Eur J Hum Genet       Date:  2012-03-21       Impact factor: 4.246

Review 4.  RNA-Seq and human complex diseases: recent accomplishments and future perspectives.

Authors:  Valerio Costa; Marianna Aprile; Roberta Esposito; Alfredo Ciccodicola
Journal:  Eur J Hum Genet       Date:  2012-06-27       Impact factor: 4.246

Review 5.  Advantages and limitations of current network inference methods.

Authors:  Riet De Smet; Kathleen Marchal
Journal:  Nat Rev Microbiol       Date:  2010-08-31       Impact factor: 60.633

6.  Correction for hidden confounders in the genetic analysis of gene expression.

Authors:  Jennifer Listgarten; Carl Kadie; Eric E Schadt; David Heckerman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-01       Impact factor: 11.205

Review 7.  Genetic causes of high and low serum HDL-cholesterol.

Authors:  Daphna Weissglas-Volkov; Päivi Pajukanta
Journal:  J Lipid Res       Date:  2010-04-26       Impact factor: 5.922

Review 8.  Genome-wide approaches to schizophrenia.

Authors:  Jubao Duan; Alan R Sanders; Pablo V Gejman
Journal:  Brain Res Bull       Date:  2010-04-28       Impact factor: 4.077

9.  Pain imaging in the emerging era of molecular medicine.

Authors:  Christian S Stohler; Jon-Kar Zubieta
Journal:  Methods Mol Biol       Date:  2010

Review 10.  Linking variants from genome-wide association analysis to function via transcriptional network analysis.

Authors:  Benjamin Keller; Sebastian Martini; John Sedor; Matthias Kretzler
Journal:  Semin Nephrol       Date:  2010-03       Impact factor: 5.299

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