Literature DB >> 19213705

Reproducing kernel Hilbert spaces regression: a general framework for genetic evaluation.

G de Los Campos1, D Gianola, G J M Rosa.   

Abstract

Reproducing kernel Hilbert spaces (RKHS) methods are widely used for statistical learning in many areas of endeavor. Recently, these methods have been suggested as a way of incorporating dense markers into genetic models. This note argues that RKHS regression provides a general framework for genetic evaluation that can be used either for pedigree- or marker-based regressions and under any genetic model, infinitesimal or not, and additive or not. Most of the standard models for genetic evaluation, such as infinitesimal animal or sire models, and marker-assisted selection models appear as special cases of RKHS methods.

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Year:  2009        PMID: 19213705     DOI: 10.2527/jas.2008-1259

Source DB:  PubMed          Journal:  J Anim Sci        ISSN: 0021-8812            Impact factor:   3.159


  64 in total

1.  A non-parametric mixture model for genome-enabled prediction of genetic value for a quantitative trait.

Authors:  Daniel Gianola; Xiao-Lin Wu; Eduardo Manfredi; Henner Simianer
Journal:  Genetica       Date:  2010-08-25       Impact factor: 1.082

2.  Predicting quantitative traits with regression models for dense molecular markers and pedigree.

Authors:  Gustavo de los Campos; Hugo Naya; Daniel Gianola; José Crossa; Andrés Legarra; Eduardo Manfredi; Kent Weigel; José Miguel Cotes
Journal:  Genetics       Date:  2009-03-16       Impact factor: 4.562

3.  Prediction of genetic values of quantitative traits with epistatic effects in plant breeding populations.

Authors:  D Wang; I Salah El-Basyoni; P Stephen Baenziger; J Crossa; K M Eskridge; I Dweikat
Journal:  Heredity (Edinb)       Date:  2012-08-15       Impact factor: 3.821

Review 4.  Predicting genetic predisposition in humans: the promise of whole-genome markers.

Authors:  Gustavo de los Campos; Daniel Gianola; David B Allison
Journal:  Nat Rev Genet       Date:  2010-11-03       Impact factor: 53.242

Review 5.  Additive genetic variability and the Bayesian alphabet.

Authors:  Daniel Gianola; Gustavo de los Campos; William G Hill; Eduardo Manfredi; Rohan Fernando
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

6.  Marker-assisted prediction of non-additive genetic values.

Authors:  Nanye Long; Daniel Gianola; Guilherme J M Rosa; Kent A Weigel
Journal:  Genetica       Date:  2011-06-15       Impact factor: 1.082

7.  Priors in whole-genome regression: the bayesian alphabet returns.

Authors:  Daniel Gianola
Journal:  Genetics       Date:  2013-05-01       Impact factor: 4.562

8.  Poly-omic prediction of complex traits: OmicKriging.

Authors:  Heather E Wheeler; Keston Aquino-Michaels; Eric R Gamazon; Vassily V Trubetskoy; M Eileen Dolan; R Stephanie Huang; Nancy J Cox; Hae Kyung Im
Journal:  Genet Epidemiol       Date:  2014-05-02       Impact factor: 2.135

9.  Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers.

Authors:  José Crossa; Gustavo de Los Campos; Paulino Pérez; Daniel Gianola; Juan Burgueño; José Luis Araus; Dan Makumbi; Ravi P Singh; Susanne Dreisigacker; Jianbing Yan; Vivi Arief; Marianne Banziger; Hans-Joachim Braun
Journal:  Genetics       Date:  2010-09-02       Impact factor: 4.562

10.  A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers.

Authors:  Gerhard Moser; Bruce Tier; Ron E Crump; Mehar S Khatkar; Herman W Raadsma
Journal:  Genet Sel Evol       Date:  2009-12-31       Impact factor: 4.297

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