Literature DB >> 19205897

Time efficient detection of protein-ligand interactions with the polarization optimized PO-WaterLOGSY NMR experiment.

Alvar D Gossert1, Christelle Henry, Marcel J J Blommers, Wolfgang Jahnke, César Fernández.   

Abstract

The identification of compounds that bind to a protein of interest is of central importance in contemporary drug research. For screening of compound libraries, NMR techniques are widely used, in particular the Water-Ligand Observed via Gradient SpectroscopY (WaterLOGSY) experiment. Here we present an optimized experiment, the polarization optimized WaterLOGSY (PO-WaterLOGSY). Based on a water flip-back strategy in conjunction with model calculations and numerical simulations, the PO-WaterLOGSY is optimized for water polarization recovery. Compared to a standard setup with the conventional WaterLOGSY, time consuming relaxation delays have been considerably shortened and can even be omitted through this approach. Furthermore, the robustness of the pulse sequence in an industrial setup was increased by the use of hard pulse trains for selective water excitation and water suppression. The PO-WaterLOGSY thus yields increased time efficiency by factor of 3-5 when compared with previously published schemes. These time savings have a substantial impact in drug discovery, since significantly larger compound libraries can be tested in screening campaigns.

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Year:  2009        PMID: 19205897     DOI: 10.1007/s10858-009-9303-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  9 in total

1.  WaterLOGSY as a method for primary NMR screening: practical aspects and range of applicability.

Authors:  C Dalvit; G Fogliatto; A Stewart; M Veronesi; B Stockman
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  Managing the solvent water polarization to obtain improved NMR spectra of large molecular structures.

Authors:  Sebastian Hiller; Gerhard Wider; Touraj Etezady-Esfarjani; Reto Horst; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

Review 4.  Microcoil NMR spectroscopy: a novel tool for biological high throughput NMR spectroscopy.

Authors:  Russell E Hopson; Wolfgang Peti
Journal:  Methods Mol Biol       Date:  2008

5.  Discovering high-affinity ligands for proteins: SAR by NMR.

Authors:  S B Shuker; P J Hajduk; R P Meadows; S W Fesik
Journal:  Science       Date:  1996-11-29       Impact factor: 47.728

6.  Transverse relaxation-optimized NMR spectroscopy with the outer membrane protein OmpX in dihexanoyl phosphatidylcholine micelles.

Authors:  C Fernández; K Adeishvili; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

7.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

8.  Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water.

Authors:  C Dalvit; P Pevarello; M Tatò; M Veronesi; A Vulpetti; M Sundström
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

9.  SALMON: solvent accessibility, ligand binding, and mapping of ligand orientation by NMR spectroscopy.

Authors:  Christian Ludwig; Paul J A Michiels; Xiaoqiu Wu; Kathryn L Kavanagh; Ewa Pilka; Anna Jansson; Udo Oppermann; Ulrich L Günther
Journal:  J Med Chem       Date:  2007-12-07       Impact factor: 7.446

  9 in total
  8 in total

1.  Ligand-observed NMR techniques to probe RNA-small molecule interactions.

Authors:  David R Calabrese; Colleen M Connelly; John S Schneekloth
Journal:  Methods Enzymol       Date:  2019-06-06       Impact factor: 1.600

2.  Biomolecular ligands screening using radiation damping difference WaterLOGSY spectroscopy.

Authors:  Peng Sun; Xianwang Jiang; Bin Jiang; Xu Zhang; Maili Liu
Journal:  J Biomol NMR       Date:  2013-06-06       Impact factor: 2.835

Review 3.  Structural features of cytochromes P450 and ligands that affect drug metabolism as revealed by X-ray crystallography and NMR.

Authors:  Sean C Gay; Arthur G Roberts; James R Halpert
Journal:  Future Med Chem       Date:  2010-09       Impact factor: 3.808

4.  Comparison of the sensitivities of WaterLOGSY and saturation transfer difference NMR experiments.

Authors:  Aleksandar Antanasijevic; Benjamin Ramirez; Michael Caffrey
Journal:  J Biomol NMR       Date:  2014-09       Impact factor: 2.835

5.  Discovery of selective small-molecule activators of a bacterial glycoside hydrolase.

Authors:  John F Darby; Jens Landström; Christian Roth; Yuan He; Gideon J Davies; Roderick E Hubbard
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-07       Impact factor: 15.336

6.  Automated NMR fragment based screening identified a novel interface blocker to the LARG/RhoA complex.

Authors:  Jia Gao; Rongsheng Ma; Wei Wang; Na Wang; Ryan Sasaki; David Snyderman; Jihui Wu; Ke Ruan
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

7.  Identification of Two Secondary Ligand Binding Sites in 14-3-3 Proteins Using Fragment Screening.

Authors:  Eline Sijbesma; Lukasz Skora; Seppe Leysen; Luc Brunsveld; Uwe Koch; Peter Nussbaumer; Wolfgang Jahnke; Christian Ottmann
Journal:  Biochemistry       Date:  2017-07-21       Impact factor: 3.162

Review 8.  Process of Fragment-Based Lead Discovery-A Perspective from NMR.

Authors:  Rongsheng Ma; Pengchao Wang; Jihui Wu; Ke Ruan
Journal:  Molecules       Date:  2016-07-16       Impact factor: 4.411

  8 in total

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