Literature DB >> 16041484

Managing the solvent water polarization to obtain improved NMR spectra of large molecular structures.

Sebastian Hiller1, Gerhard Wider, Touraj Etezady-Esfarjani, Reto Horst, Kurt Wüthrich.   

Abstract

In large molecular structures, the magnetization of all hydrogen atoms in the solute is strongly coupled to the water magnetization through chemical exchange between solvent water and labile protons of macromolecular components, and through dipole-dipole interactions and the associated "spin diffusion" due to slow molecular tumbling. In NMR experiments with such systems, the extent of the water polarization is thus of utmost importance. This paper presents a formalism that describes the propagation of the water polarization during the course of different NMR experiments, and then compares the results of model calculations for optimized water polarization with experimental data. It thus demonstrates that NMR spectra of large molecular structures can be improved with the use of paramagnetic spin relaxation agents which selectively enhance the relaxation of water protons, so that a substantial gain in signal-to-noise can be achieved. The presently proposed use of a relaxation agent can also replace the water flip-back pulses when working with structures larger than about 30 kDa. This may be a valid alternative in situations where flip-back pulses are difficult to introduce into the overall experimental scheme, or where they would interfere with other requirements of the NMR experiment.

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Year:  2005        PMID: 16041484     DOI: 10.1007/s10858-005-3070-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

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3.  The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex.

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5.  Cross relaxation and spin diffusion effects on the proton NMR of biopolymers in H2O. Solvent saturation and chemical exchange in superoxide dismutase.

Authors:  J D Stoesz; A G Redfield
Journal:  FEBS Lett       Date:  1978-07-15       Impact factor: 4.124

6.  Selective spin diffusion. A novel method for studying motional properties of biopolymers in solution.

Authors:  K Akasaka; M Konrad; R S Goody
Journal:  FEBS Lett       Date:  1978-12-15       Impact factor: 4.124

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8.  Organic solvents identify specific ligand binding sites on protein surfaces.

Authors:  E Liepinsh; G Otting
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10.  Membrane protein-lipid interactions in mixed micelles studied by NMR spectroscopy with the use of paramagnetic reagents.

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  24 in total

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6.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

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8.  Water proton spin saturation affects measured protein backbone 15N spin relaxation rates.

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9.  Characterization of different water pools in solid-state NMR protein samples.

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10.  4D experiments measured with APSY for automated backbone resonance assignments of large proteins.

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Journal:  J Biomol NMR       Date:  2013-04-30       Impact factor: 2.835

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