Literature DB >> 25015532

Comparison of the sensitivities of WaterLOGSY and saturation transfer difference NMR experiments.

Aleksandar Antanasijevic, Benjamin Ramirez, Michael Caffrey.   

Abstract

The WaterLOGSY (WL) and saturation transfer difference (STD) NMR experiments have proven to be extremely useful techniques to characterize interactions between small molecules and large biomolecules. In this work we compare the relative sensitivities of WL and STD NMR using 3 experimental systems: ketoprofen (KET)-bovine serum albumin (BSA), tert-butyl hydroquinone (TBHQ)-hemagglutinin (HA), and chloramphenicol (CAM)-ribosome (70S). In all cases we find that WL is more sensitive than STD for a given experimental time with the ratios ranging from 3.2 for KET-BSA to 16 for TBHQ-HA and CAM-70S. We attribute the increased sensitivity of WL to be due to simultaneous saturation of multiple sources of cross correlation, including direct NOEs of 1H of water and exchangeable groups and indirect NOEs of 1H-C groups. We suggest that the outstanding sensitivity of WL make it ideally suited for drug screening efforts targeting very large biomolecules at relatively low concentrations.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25015532      PMCID: PMC4201884          DOI: 10.1007/s10858-014-9848-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  21 in total

1.  Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria.

Authors:  F Schlünzen; R Zarivach; J Harms; A Bashan; A Tocilj; R Albrecht; A Yonath; F Franceschi
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

2.  WaterLOGSY as a method for primary NMR screening: practical aspects and range of applicability.

Authors:  C Dalvit; G Fogliatto; A Stewart; M Veronesi; B Stockman
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

3.  Binding constant determination of drugs toward subdomain IIIA of human serum albumin by near-infrared dye-displacement capillary electrophoresis.

Authors:  J Sowell; J C Mason; L Strekowski; G Patonay
Journal:  Electrophoresis       Date:  2001-08       Impact factor: 3.535

4.  Detecting ligand binding to a small RNA target via saturation transfer difference NMR experiments in D(2)O and H(2)O.

Authors:  Moriz Mayer; Thomas L James
Journal:  J Am Chem Soc       Date:  2002-11-13       Impact factor: 15.419

Review 5.  Ligand-target interactions: what can we learn from NMR?

Authors:  Teresa Carlomagno
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

6.  Sensitivity enhancement in saturation transfer difference (STD) experiments through optimized excitation schemes.

Authors:  Brian Cutting; Sachin V Shelke; Zorica Dragic; Beatrice Wagner; Heiko Gathje; Soerge Kelm; Beat Ernst
Journal:  Magn Reson Chem       Date:  2007-09       Impact factor: 2.447

7.  Discovering high-affinity ligands for proteins: SAR by NMR.

Authors:  S B Shuker; P J Hajduk; R P Meadows; S W Fesik
Journal:  Science       Date:  1996-11-29       Impact factor: 47.728

8.  Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor.

Authors:  M Mayer; B Meyer
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

9.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

10.  A novel site of antibiotic action in the ribosome: interaction of evernimicin with the large ribosomal subunit.

Authors:  L Belova; T Tenson; L Xiong; P M McNicholas; A S Mankin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

View more
  12 in total

1.  Probing the metastable state of influenza hemagglutinin.

Authors:  Carolyn N Kingsley; Aleksandar Antanasijevic; Helena Palka-Hamblin; Matthew Durst; Benjamin Ramirez; Arnon Lavie; Michael Caffrey
Journal:  J Biol Chem       Date:  2017-11-10       Impact factor: 5.157

2.  Application of virus-like particles (VLP) to NMR characterization of viral membrane protein interactions.

Authors:  Aleksandar Antanasijevic; Carolyn Kingsley; Arnab Basu; Terry L Bowlin; Lijun Rong; Michael Caffrey
Journal:  J Biomol NMR       Date:  2016-02-26       Impact factor: 2.835

3.  Spin Saturation Transfer Difference NMR (SSTD NMR): A New Tool to Obtain Kinetic Parameters of Chemical Exchange Processes.

Authors:  María Teresa Quirós; Colin Macdonald; Jesús Angulo; María Paz Muñoz
Journal:  J Vis Exp       Date:  2016-11-12       Impact factor: 1.355

4.  NMR WaterLOGSY Reveals Weak Binding of Bisphenol A with Amyloid Fibers of a Conserved 11 Residue Peptide from Androgen Receptor.

Authors:  Julia Asencio-Hernández; Bruno Kieffer; Marc-André Delsuc
Journal:  PLoS One       Date:  2016-09-01       Impact factor: 3.240

5.  Structure of avian influenza hemagglutinin in complex with a small molecule entry inhibitor.

Authors:  Aleksandar Antanasijevic; Matthew A Durst; Han Cheng; Irina N Gaisina; Jasmine T Perez; Balaji Manicassamy; Lijun Rong; Arnon Lavie; Michael Caffrey
Journal:  Life Sci Alliance       Date:  2020-07-01

6.  Sertraline, chlorprothixene, and chlorpromazine characteristically interact with the REST-binding site of the corepressor mSin3, showing medulloblastoma cell growth inhibitory activities.

Authors:  Jun-Ichi Kurita; Yuuka Hirao; Hirofumi Nakano; Yoshifumi Fukunishi; Yoshifumi Nishimura
Journal:  Sci Rep       Date:  2018-09-13       Impact factor: 4.379

7.  Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography.

Authors:  Aleksandar Antanasijevic; Matthew A Durst; Arnon Lavie; Michael Caffrey
Journal:  J Struct Biol       Date:  2019-11-02       Impact factor: 2.867

8.  CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR.

Authors:  Luca G Mureddu; Timothy J Ragan; Edward J Brooksbank; Geerten W Vuister
Journal:  J Biomol NMR       Date:  2020-07-07       Impact factor: 2.835

Review 9.  Assay design and development strategies for finding Hsp90 inhibitors and their role in human diseases.

Authors:  Monimoy Banerjee; Ishita Hatial; Bradley M Keegan; Brian S J Blagg
Journal:  Pharmacol Ther       Date:  2020-11-24       Impact factor: 12.310

Review 10.  Target-Directed Approaches for Screening Small Molecules against RNA Targets.

Authors:  Hafeez S Haniff; Laurent Knerr; Jonathan L Chen; Matthew D Disney; Helen L Lightfoot
Journal:  SLAS Discov       Date:  2020-05-18       Impact factor: 3.341

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.