Literature DB >> 19193997

Crystallization and preliminary crystallographic analysis of the second RRM of Pub1 from Saccharomyces cerevisiae.

Yingji Cui1, Heng Li, Xu Li, Yang Li, Huihao Zhou, Liwen Niu, Maikun Teng.   

Abstract

mRNA stability is elaborately regulated by elements in the mRNA transcripts and their cognate RNA-binding proteins, which play important roles in regulating gene expression at the post-transcriptional level in eukaryotes. Poly(U)-binding protein 1 (Pub1), which is a major nuclear and cytoplasmic polyadenylated RNA-binding protein in Saccharomyces cerevisiae, is involved in the regulation of mRNA turnover as a trans-acting factor. It binds to transcripts containing the AU-rich element in order to protect them from degradation. Pub1 contains three RNA-recognition motifs (RRMs) which play significant roles in mRNA binding at AU-rich elements and stabilizer elements. In this study, the second RRM of Pub1 was crystallized by the hanging-drop vapour-diffusion method using polyethylene glycol 4000 as a precipitant at 283 K. An X-ray diffraction data set was collected using a single flash-cooled crystal that belonged to space group H3.

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Year:  2009        PMID: 19193997      PMCID: PMC2635859          DOI: 10.1107/S1744309108040682

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames.

Authors:  M J Ruiz-Echevarría; S W Peltz
Journal:  Cell       Date:  2000-06-23       Impact factor: 41.582

2.  The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites.

Authors:  Patrik Förch; Oscar Puig; Concepción Martínez; Bertrand Séraphin; Juan Valcárcel
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

Review 3.  MRNA stability and the control of gene expression: implications for human disease.

Authors:  Elysia M Hollams; Keith M Giles; Andrew M Thomson; Peter J Leedman
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

4.  Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae.

Authors:  S Vasudevan; S W Peltz
Journal:  Mol Cell       Date:  2001-06       Impact factor: 17.970

Review 5.  The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression.

Authors:  Christophe Maris; Cyril Dominguez; Frédéric H-T Allain
Journal:  FEBS J       Date:  2005-05       Impact factor: 5.542

6.  Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability.

Authors:  Radharani Duttagupta; Bin Tian; Carol J Wilusz; Danny T Khounh; Patricia Soteropoulos; Ming Ouyang; Joseph P Dougherty; Stuart W Peltz
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

7.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Structure of the central RNA recognition motif of human TIA-1 at 1.95A resolution.

Authors:  Amit O Kumar; Matthew C Swenson; Matthew M Benning; Clara L Kielkopf
Journal:  Biochem Biophys Res Commun       Date:  2008-01-15       Impact factor: 3.575

10.  An interaction between two RNA binding proteins, Nab2 and Pub1, links mRNA processing/export and mRNA stability.

Authors:  Luciano H Apponi; Seth M Kelly; Michelle T Harreman; Alexander N Lehner; Anita H Corbett; Sandro R Valentini
Journal:  Mol Cell Biol       Date:  2007-07-16       Impact factor: 4.272

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