Literature DB >> 18201561

Structure of the central RNA recognition motif of human TIA-1 at 1.95A resolution.

Amit O Kumar1, Matthew C Swenson, Matthew M Benning, Clara L Kielkopf.   

Abstract

T-cell-restricted intracellular antigen-1 (TIA-1) regulates alternative pre-mRNA splicing in the nucleus, and mRNA translation in the cytoplasm, by recognizing uridine-rich sequences of RNAs. As a step towards understanding RNA recognition by this regulatory factor, the X-ray structure of the central RNA recognition motif (RRM2) of human TIA-1 is presented at 1.95A resolution. Comparison with structurally homologous RRM-RNA complexes identifies residues at the RNA interfaces that are conserved in TIA-1-RRM2. The versatile capability of RNP motifs to interact with either proteins or RNA is reinforced by symmetry-related protein-protein interactions mediated by the RNP motifs of TIA-1-RRM2. Importantly, the TIA-1-RRM2 structure reveals the locations of mutations responsible for inhibiting nuclear import. In contrast with previous assumptions, the mutated residues are buried within the hydrophobic interior of the domain, where they would be likely to destabilize the RRM fold rather than directly inhibit RNA binding.

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Year:  2008        PMID: 18201561      PMCID: PMC2394723          DOI: 10.1016/j.bbrc.2008.01.027

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  44 in total

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3.  Crystallization and preliminary X-ray analysis of a U2AF65 variant in complex with a polypyrimidine-tract analogue by use of protein engineering.

Authors:  E Allen Sickmier; Katherine E Frato; Clara L Kielkopf
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-04-12

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5.  Recognition of polyadenylate RNA by the poly(A)-binding protein.

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Journal:  J Biol Chem       Date:  2003-01-17       Impact factor: 5.157

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Review 10.  Sequence-specific binding of single-stranded RNA: is there a code for recognition?

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  14 in total

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Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

Review 2.  T-cell intracellular antigens in health and disease.

Authors:  Carmen Sánchez-Jiménez; José M Izquierdo
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

3.  RNA binding of T-cell intracellular antigen-1 (TIA-1) C-terminal RNA recognition motif is modified by pH conditions.

Authors:  Isabel Cruz-Gallardo; Ángeles Aroca; Cecilia Persson; B Göran Karlsson; Irene Díaz-Moreno
Journal:  J Biol Chem       Date:  2013-07-31       Impact factor: 5.157

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Authors:  William J Bauer; Jason Heath; Jermaine L Jenkins; Clara L Kielkopf
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5.  The binding of TIA-1 to RNA C-rich sequences is driven by its C-terminal RRM domain.

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6.  Crystallization and preliminary crystallographic analysis of the second RRM of Pub1 from Saccharomyces cerevisiae.

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-07

7.  Determinants of Nam8-dependent splicing of meiotic pre-mRNAs.

Authors:  Zhicheng R Qiu; Beate Schwer; Stewart Shuman
Journal:  Nucleic Acids Res       Date:  2011-01-05       Impact factor: 16.971

8.  Distinct binding properties of TIAR RRMs and linker region.

Authors:  Henry S Kim; Stephen J Headey; Yano M K Yoga; Martin J Scanlon; Myriam Gorospe; Matthew C J Wilce; Jacqueline A Wilce
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9.  Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1.

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10.  The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.

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