Literature DB >> 19189977

Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.

Armando Reyes-Palomares1, Raul Montañez, Alejando Real-Chicharro, Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel Angel Medina, José F Aldana-Montes, Francisca Sánchez-Jiménez.   

Abstract

SUMMARY: We present Systems Biology Metabolic Modeling Assistant (SBMM Assistant), a tool built using an ontology-based mediator, and designed to facilitate metabolic modeling through the integration of data from repositories that contain valuable metabolic information. This software can be used for the visualization, design and management of metabolic networks; selection, integration and storage of metabolic information; and as an assistant for kinetic modeling. AVAILABILITY: SBMM Assistant for academic use is freely available at http://www.sbmm.uma.es.

Mesh：

Year:  2009        PMID： 19189977     DOI： 10.1093/bioinformatics/btp061

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.

Authors:  Astrid Junker; Hendrik Rohn; Tobias Czauderna; Christian Klukas; Anja Hartmann; Falk Schreiber
Journal:  Nat Protoc       Date:  2012-03-01       Impact factor: 13.491

Review 2.  Systems biology for molecular life sciences and its impact in biomedicine.

Authors:  Miguel Ángel Medina
Journal:  Cell Mol Life Sci       Date:  2012-08-19       Impact factor: 9.261

3.  Transparent mediation-based access to multiple yeast data sources using an ontology driven interface.

Authors:  Abdelaali Briache; Kamar Marrakchi; Amine Kerzazi; Ismael Navas-Delgado; Badr D Rossi Hassani; Khalid Lairini; José F Aldana-Montes
Journal:  BMC Bioinformatics       Date:  2012-01-25       Impact factor: 3.169

4.  Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference.

Authors:  Jonathan D Wren; Doris M Kupfer; Edward J Perkins; Susan Bridges; Daniel Berleant
Journal:  BMC Bioinformatics       Date:  2010-10-07       Impact factor: 3.169

Review 5.  What is known on angiogenesis-related rare diseases? A systematic review of literature.

Authors:  Luis Rodríguez-Caso; Armando Reyes-Palomares; Francisca Sánchez-Jiménez; Ana R Quesada; Miguel Ángel Medina
Journal:  J Cell Mol Med       Date:  2012-12       Impact factor: 5.310

6.  KA-SB: from data integration to large scale reasoning.

Authors:  María del Mar Roldán-García; Ismael Navas-Delgado; Amine Kerzazi; Othmane Chniber; Joaquín Molina-Castro; José F Aldana-Montes
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

7.  A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY.

Authors:  Francesco Pappalardo; Marie-Paule Lefranc; Pier-Luigi Lollini; Santo Motta
Journal:  Immunome Res       Date:  2010-02-18

8.  PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome.

Authors:  Agatha Schlüter; Alejandro Real-Chicharro; Toni Gabaldón; Francisca Sánchez-Jiménez; Aurora Pujol
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.