Literature DB >> 19185508

Ab initio investigation of the hydration of deprotonated amino acids.

Catherine Michaux1, Johan Wouters, Eric A Perpète, Denis Jacquemin.   

Abstract

The complexation of five deprotonated anionic amino acids (glycine, L-alanine, L-valine, L-Aspartic acid, and L-glutamine) with one water molecule, has been investigated using a MP2/63-11++G(d,p) approach fully accounting for the basis set superposition errors. For each amino acid, several energetic minima have been identified, and we provide spectroscopic information allowing to discriminate them. Our results strongly suggest that two complexes should coexist under the experimental conditions for [Ala - H](-), [Val - H](-), and [Asp - H](-). Comparisons with the experimental enthalpies, entropies, and Gibbs free energies recently obtained by Wincel [J. Am. Soc. Mass Spectrom. 2008, 19, 1091-1097] show that our simulation reproduces the most significant structure/energy experimental trends, though the entropic changes induced by hydration are slightly overestimated.

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Year:  2008        PMID: 19185508     DOI: 10.1016/j.jasms.2008.11.025

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  14 in total

1.  Investigation of noncovalent interactions in deprotonated peptides: structural and energetic competition between aggregation and hydration.

Authors:  Dengfeng Liu; Thomas Wyttenbach; Catherine J Carpenter; Michael T Bowers
Journal:  J Am Chem Soc       Date:  2004-03-17       Impact factor: 15.419

2.  Incremental solvation of nonionized and zwitterionic glycine.

Authors:  Christine M Aikens; Mark S Gordon
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

3.  The origin of deficiency of the supermolecule second-order Moller-Plesset approach for evaluating interaction energies.

Authors:  Slawomir M Cybulski; Marion L Lytle
Journal:  J Chem Phys       Date:  2007-10-14       Impact factor: 3.488

4.  Assessment of the MP2 method, along with several basis sets, for the computation of interaction energies of biologically relevant hydrogen bonded and dispersion bound complexes.

Authors:  Kevin E Riley; Pavel Hobza
Journal:  J Phys Chem A       Date:  2007-07-25       Impact factor: 2.781

5.  Hydrated metal ions in the gas phase.

Authors:  Martin K Beyer
Journal:  Mass Spectrom Rev       Date:  2007 Jul-Aug       Impact factor: 10.946

6.  Infrared spectroscopy of hydrated amino acids in the gas phase: protonated and lithiated valine.

Authors:  Anthi Kamariotis; Oleg V Boyarkin; Sébastien R Mercier; Rainer D Beck; Matthew F Bush; Evan R Williams; Thomas R Rizzo
Journal:  J Am Chem Soc       Date:  2006-01-25       Impact factor: 15.419

7.  Hydration energies of deprotonated amino acids from gas phase equilibria measurements.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2008-05-28       Impact factor: 3.109

8.  Conformations of proline analogues having double bonds in the ring.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; David Zanuy; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2007-04-26       Impact factor: 2.991

9.  One water molecule stabilizes the cationized arginine zwitterion.

Authors:  Matthew F Bush; James S Prell; Richard J Saykally; Evan R Williams
Journal:  J Am Chem Soc       Date:  2007-10-11       Impact factor: 15.419

10.  Modeling the microhydration of protonated alanine.

Authors:  Catherine Michaux; Johan Wouters; Eric A Perpète; Denis Jacquemin
Journal:  J Phys Chem B       Date:  2008-07-23       Impact factor: 2.991

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