Literature DB >> 17929811

One water molecule stabilizes the cationized arginine zwitterion.

Matthew F Bush1, James S Prell, Richard J Saykally, Evan R Williams.   

Abstract

Singly hydrated clusters of lithiated arginine, sodiated arginine, and lithiated arginine methyl ester are investigated using infrared action spectroscopy and computational chemistry. Whereas unsolvated lithiated arginine is nonzwitterionic, these results provide compelling evidence that attachment of a single water molecule to this ion makes the zwitterionic form of arginine, in which the side chain is protonated, more stable. The experimental spectra of lithiated and sodiated arginine with one water molecule are very similar and contain spectral signatures for protonated side chains, whereas those of lithiated arginine and singly hydrated lithiated arginine methyl ester are different and contain spectral signatures for neutral side chains. Calculations at the B3LYP/6-31++G** level of theory indicate that solvating lithiated arginine with a single water molecule preferentially stabilizes the zwitterionic forms of this ion by 25-32 kJ/mol and two essentially isoenergetic zwitterionic structure are most stable. In these structures, the metal ion either coordinates with the N-terminal amino group and an oxygen atom of the carboxylate group (NO coordinated) or with both oxygen atoms of the carboxylate group (OO coordinated). In contrast, the OO-coordinated zwitterionic structure of sodiated arginine, both with and without a water molecule, is clearly lowest in energy for both ions. Hydration of the metal ion in these clusters weakens the interactions between the metal ion and the amino acid, whereas hydrogen-bond strengths are largely unaffected. Thus, hydration preferentially stabilizes the zwitterionic structures, all of which contain strong hydrogen bonds. Metal ion size strongly affects the relative propensity for these ions to form NO or OO coordinated structures and results in different zwitterionic structures for lithiated and sodiated arginine clusters containing one water molecule.

Entities:  

Year:  2007        PMID: 17929811     DOI: 10.1021/ja073796b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

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2.  Evaluation of different implementations of the Thomson liquid drop model: comparison to monovalent and divalent cluster ion experimental data.

Authors:  William A Donald; Evan R Williams
Journal:  J Phys Chem A       Date:  2008-03-22       Impact factor: 2.781

3.  Hydration energies of deprotonated amino acids from gas phase equilibria measurements.

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4.  IRPD spectroscopy and ensemble measurements: effects of different data acquisition and analysis methods.

Authors:  James S Prell; Jeremy T O'Brien; Evan R Williams
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5.  Conformational analysis of glutamic acid: a density functional approach using implicit continuum solvent model.

Authors:  Başak Turan; Cenk Selçuki
Journal:  J Mol Model       Date:  2014-08-19       Impact factor: 1.810

6.  Ab initio investigation of the hydration of deprotonated amino acids.

Authors:  Catherine Michaux; Johan Wouters; Eric A Perpète; Denis Jacquemin
Journal:  J Am Soc Mass Spectrom       Date:  2008-12-31       Impact factor: 3.109

7.  On the zwitterionic nature of gas-phase peptides and protein ions.

Authors:  Roberto Marchese; Rita Grandori; Paolo Carloni; Simone Raugei
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

8.  Different proton transfer channels for the transformation of zwitterionic alanine-(H₂O)(n=2-4) to nonzwitterionic alanine-(H₂O)(n=2-4): a density functional theory study.

Authors:  Animesh K Ojha; Snehasis Bhunia
Journal:  J Mol Model       Date:  2014-02-28       Impact factor: 1.810

9.  Nanocalorimetry in mass spectrometry: a route to understanding ion and electron solvation.

Authors:  William A Donald; Ryan D Leib; Jeremy T O'Brien; Anne I S Holm; Evan R Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-07       Impact factor: 11.205

10.  A proline-based neuraminidase inhibitor: DFT studies on the zwitterion conformation, stability and formation.

Authors:  Zhi-Wei Yang; Xiao-Min Wu; Li-Jun Zhou; Gang Yang
Journal:  Int J Mol Sci       Date:  2009-09-07       Impact factor: 6.208

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