Literature DB >> 17458993

Conformations of proline analogues having double bonds in the ring.

Alejandra Flores-Ortega1, Jordi Casanovas, David Zanuy, Ruth Nussinov, Carlos Alemán.   

Abstract

The intrinsic conformational preferences of proline analogues having double bonds between carbon atoms in their rings have been investigated using quantum mechanical calculations at the B3LYP/6-31+G(d,p) level. For this purpose, the potential energy surface of the N-acety-N'-methylamide derivatives of three dehydroprolines (proline analogues unsaturated at alpha,beta; beta,gamma; and gamma,delta) and pyrrole (proline analogue with unsaturations at both alpha,beta and gamma,delta) have been explored, and the results are compared with those obtained for the derivative of the nonmodified proline. We found that the double bonds affect the ring puckering and the geometric internal parameters, even though the backbone conformation was influenced the most. Results indicate that the formation of double bonds between carbon atoms in the pyrrolidine ring should be considered as an effective procedure to restrict the conformational flexibility of prolines. Interestingly, we also found that the N-acetyl-N'-methylamide derivative of pyrrole shows a high probability of having a cis peptide bond preceding the proline analogue.

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Year:  2007        PMID: 17458993     DOI: 10.1021/jp0712001

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Synthesis and evaluation of new endomorphin analogues modified at the Pro(2) residue.

Authors:  Domenica Torino; Adriano Mollica; Francesco Pinnen; Gino Lucente; Federica Feliciani; Peg Davis; Josephine Lai; Shou-Wu Ma; Frank Porreca; Victor J Hruby
Journal:  Bioorg Med Chem Lett       Date:  2009-06-06       Impact factor: 2.823

2.  Ab initio investigation of the hydration of deprotonated amino acids.

Authors:  Catherine Michaux; Johan Wouters; Eric A Perpète; Denis Jacquemin
Journal:  J Am Soc Mass Spectrom       Date:  2008-12-31       Impact factor: 3.109

3.  Conformational preferences of alpha-substituted proline analogues.

Authors:  Alejandra Flores-Ortega; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán; Jordi Casanovas
Journal:  J Org Chem       Date:  2008-03-20       Impact factor: 4.354

4.  Conformational preferences of beta- and gamma-aminated proline analogues.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

5.  Understanding Ring Puckering in Small Molecules and Cyclic Peptides.

Authors:  Lucian Chan; Geoffrey R Hutchison; Garrett M Morris
Journal:  J Chem Inf Model       Date:  2021-02-05       Impact factor: 4.956

6.  cis-trans-Amide isomerism of the 3,4-dehydroproline residue, the 'unpuckered' proline.

Authors:  Vladimir Kubyshkin; Nediljko Budisa
Journal:  Beilstein J Org Chem       Date:  2016-03-29       Impact factor: 2.883

  6 in total

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