Literature DB >> 19181512

Transcriptional memory at the nuclear periphery.

Jason H Brickner1.   

Abstract

A number of inducible yeast genes are targeted to the nuclear periphery upon transcriptional activation. However, when repressed again, the INO1 and GAL1 genes remain at the nuclear periphery for multiple generations. Retention at the nuclear periphery represents a novel type of transcriptional memory; the peripherally localized, recently repressed state of GAL1 is activated more rapidly than the nucleoplasmically localized long-term repressed state of GAL1. This rapid reactivation involves localization at the nuclear periphery, the SWI/SNF chromatin remodeling complex, the histone variant H2A.Z and the Gal1 protein itself. Here, I review what we have learned about this type of transcriptional memory in yeast, what remains to be resolved and the challenges associated with understanding such epigenetic phenomena.

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Year:  2009        PMID: 19181512      PMCID: PMC3965666          DOI: 10.1016/j.ceb.2009.01.007

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  43 in total

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Authors:  Susan M Gasser
Journal:  Science       Date:  2002-05-24       Impact factor: 47.728

2.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

Review 3.  Epigenetic gene regulation by noncoding RNAs.

Authors:  Angela A Andersen; Barbara Panning
Journal:  Curr Opin Cell Biol       Date:  2003-06       Impact factor: 8.382

4.  Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization.

Authors:  Jason M Casolari; Christopher R Brown; Suzanne Komili; Jason West; Haley Hieronymus; Pamela A Silver
Journal:  Cell       Date:  2004-05-14       Impact factor: 41.582

5.  A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance.

Authors:  Richard J Lawrence; Keith Earley; Olga Pontes; Manuela Silva; Z Jeffrey Chen; Nuno Neves; Wanda Viegas; Craig S Pikaard
Journal:  Mol Cell       Date:  2004-02-27       Impact factor: 17.970

Review 6.  The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae.

Authors:  Laura N Rusche; Ann L Kirchmaier; Jasper Rine
Journal:  Annu Rev Biochem       Date:  2003-03-27       Impact factor: 23.643

7.  Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin.

Authors:  Marc D Meneghini; Michelle Wu; Hiten D Madhani
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

8.  Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster.

Authors:  W F Marshall; A F Dernburg; B Harmon; D A Agard; J W Sedat
Journal:  Mol Biol Cell       Date:  1996-05       Impact factor: 4.138

9.  Gene activation by interaction of an inhibitor with a cytoplasmic signaling protein.

Authors:  Gang Peng; James E Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-25       Impact factor: 11.205

10.  DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery.

Authors:  Sara Ahmed; Donna G Brickner; William H Light; Ivelisse Cajigas; Michele McDonough; Alexander B Froyshteter; Tom Volpe; Jason H Brickner
Journal:  Nat Cell Biol       Date:  2010-01-24       Impact factor: 28.824

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  32 in total

Review 1.  The nuclear pore complex: bridging nuclear transport and gene regulation.

Authors:  Caterina Strambio-De-Castillia; Mario Niepel; Michael P Rout
Journal:  Nat Rev Mol Cell Biol       Date:  2010-07       Impact factor: 94.444

2.  A physiological role for gene loops in yeast.

Authors:  Jean-Philippe Lainé; Badri Nath Singh; Shankarling Krishnamurthy; Michael Hampsey
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

Review 3.  Histone variants and epigenetics.

Authors:  Steven Henikoff; M Mitchell Smith
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-01-05       Impact factor: 10.005

Review 4.  Do chromatin loops provide epigenetic gene expression states?

Authors:  Wulan Deng; Gerd A Blobel
Journal:  Curr Opin Genet Dev       Date:  2010-07-01       Impact factor: 5.578

5.  Disruption of promoter memory by synthesis of a long noncoding RNA.

Authors:  Yaxin Yu; Robert M Yarrington; Edward B Chuong; Nels C Elde; David J Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-09       Impact factor: 11.205

6.  Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.

Authors:  Ralph S Grand; Tatyana Pichugina; Lutz R Gehlen; M Beatrix Jones; Peter Tsai; Jane R Allison; Robert Martienssen; Justin M O'Sullivan
Journal:  Nucleic Acids Res       Date:  2014-10-23       Impact factor: 16.971

Review 7.  Nuclear pore interactions with the genome.

Authors:  Varun Sood; Jason H Brickner
Journal:  Curr Opin Genet Dev       Date:  2014-01-28       Impact factor: 5.578

Review 8.  Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators.

Authors:  Steven Hahn; Elton T Young
Journal:  Genetics       Date:  2011-11       Impact factor: 4.562

Review 9.  Manipulating nuclear architecture.

Authors:  Wulan Deng; Gerd A Blobel
Journal:  Curr Opin Genet Dev       Date:  2013-12-12       Impact factor: 5.578

10.  Transcriptional Memory in the Drosophila Embryo.

Authors:  Teresa Ferraro; Emilia Esposito; Laure Mancini; Sam Ng; Tanguy Lucas; Mathieu Coppey; Nathalie Dostatni; Aleksandra M Walczak; Michael Levine; Mounia Lagha
Journal:  Curr Biol       Date:  2015-12-31       Impact factor: 10.834

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