Literature DB >> 19167202

Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines.

Jonathan P Staley1, John L Woolford.   

Abstract

Ribosomes and spliceosomes are ribonucleoprotein nanomachines that catalyze translation of mRNA to synthesize proteins and splicing of introns from pre-mRNAs, respectively. Assembly of ribosomes involves more than 300 proteins and RNAs, and that of spliceosomes over 100 proteins and RNAs. Construction of these enormous ribonucleoprotein particles (RNPs) is a dynamic process, in which the nascent RNPs undergo numerous ordered rearrangements of RNA-RNA, RNA-protein, and protein-protein interactions. Here we outline similar principles that have emerged from studies of ribosome and spliceosome assembly. Constituents of both RNPs form subassembly complexes, which can simplify the task of assembly and segregate functions of assembly factors. Reorganization of RNP topology, and proofreading of proper assembly, are catalyzed by protein- or RNA-dependent ATPases or GTPases. Dynamics of intermolecular interactions may be facilitated or regulated by cycles of post-translational modifications. Despite this repertoire of tools, mistakes occur in RNP assembly or in processing of RNA substrates. Quality control mechanisms recognize and turnover misassembled RNPs and reject improper substrates.

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Year:  2009        PMID: 19167202      PMCID: PMC2698946          DOI: 10.1016/j.ceb.2009.01.003

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  67 in total

1.  An essential GTPase promotes assembly of preribosomal RNA processing complexes.

Authors:  Katrin Karbstein; Stefanie Jonas; Jennifer A Doudna
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

2.  GTP-dependent formation of a ribonucleoprotein subcomplex required for ribosome biogenesis.

Authors:  Katrin Karbstein; Jennifer A Doudna
Journal:  J Mol Biol       Date:  2005-12-05       Impact factor: 5.469

3.  A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release.

Authors:  Beate Schwer
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

Review 4.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

5.  The Putative RNA Helicase Dbp4p Is Required for Release of the U14 snoRNA from Preribosomes in Saccharomyces cerevisiae.

Authors:  Martin Kos; David Tollervey
Journal:  Mol Cell       Date:  2005-10-07       Impact factor: 17.970

6.  The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis.

Authors:  Nina B Leeds; Eliza C Small; Shawna L Hiley; Timothy R Hughes; Jonathan P Staley
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

7.  Prp43p is a DEAH-box spliceosome disassembly factor essential for ribosome biogenesis.

Authors:  D Joshua Combs; Roland J Nagel; Manuel Ares; Scott W Stevens
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

8.  The splicing ATPase prp43p is a component of multiple preribosomal particles.

Authors:  Simon Lebaron; Carine Froment; Micheline Fromont-Racine; Jean-Christophe Rain; Bernard Monsarrat; Michèle Caizergues-Ferrer; Yves Henry
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

9.  Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae.

Authors:  Christophe Dez; Jonathan Houseley; David Tollervey
Journal:  EMBO J       Date:  2006-03-16       Impact factor: 11.598

10.  The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles.

Authors:  Dieter Kressler; Daniela Roser; Brigitte Pertschy; Ed Hurt
Journal:  J Cell Biol       Date:  2008-06-16       Impact factor: 10.539

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  74 in total

1.  Optimizing ring assembly reveals the strength of weak interactions.

Authors:  Eric J Deeds; John A Bachman; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Sequence analysis of peptide:oligonucleotide heteroconjugates by electron capture dissociation and electron transfer dissociation.

Authors:  Kady L Krivos; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-03       Impact factor: 3.109

3.  A potential role for initiator-tRNA in pre-mRNA splicing regulation.

Authors:  Eyal Kamhi; Oleg Raitskin; Ruth Sperling; Joseph Sperling
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

Review 4.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

5.  RNase MRP is required for entry of 35S precursor rRNA into the canonical processing pathway.

Authors:  Lasse Lindahl; Ananth Bommankanti; Xing Li; Lauren Hayden; Adrienne Jones; Miriam Khan; Tolulope Oni; Janice M Zengel
Journal:  RNA       Date:  2009-05-22       Impact factor: 4.942

6.  RpL22e, but not RpL22e-like-PA, is SUMOylated and localizes to the nucleoplasm of Drosophila meiotic spermatocytes.

Authors:  Michael G Kearse; Jill A Ireland; Smrithi M Prem; Alex S Chen; Vassie C Ware
Journal:  Nucleus       Date:  2013-06-06       Impact factor: 4.197

7.  RNAtomy of the Spliceosome's heart.

Authors:  Sophie Bonnal; Juan Valcárcel
Journal:  EMBO J       Date:  2013-09-24       Impact factor: 11.598

8.  Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.

Authors:  Jelena Jakovljevic; Uli Ohmayer; Michael Gamalinda; Jason Talkish; Lisa Alexander; Jan Linnemann; Philipp Milkereit; John L Woolford
Journal:  RNA       Date:  2012-08-14       Impact factor: 4.942

9.  Studying protein complexes by the yeast two-hybrid system.

Authors:  Seesandra V Rajagopala; Patricia Sikorski; J Harry Caufield; Andrey Tovchigrechko; Peter Uetz
Journal:  Methods       Date:  2012-07-24       Impact factor: 3.608

10.  Comprehensive proteomic analysis of nonintegrin laminin receptor interacting proteins.

Authors:  Lisa Venticinque; Daniel Meruelo
Journal:  J Proteome Res       Date:  2012-08-29       Impact factor: 4.466

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