Literature DB >> 18570869

"Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Duncan J Smith1, Charles C Query, Maria M Konarska.   

Abstract

The spliceosome is both compositionally and conformationally dynamic. Each transition along the splicing pathway presents an opportunity for progression, pausing, or discard, allowing splice site choice to be regulated throughout both the assembly and catalytic phases of the reaction.

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Year:  2008        PMID: 18570869      PMCID: PMC2610350          DOI: 10.1016/j.molcel.2008.04.013

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  91 in total

1.  The invariant U5 snRNA loop 1 sequence is dispensable for the first catalytic step of pre-mRNA splicing in yeast.

Authors:  R T O'Keefe; C Norman; A J Newman
Journal:  Cell       Date:  1996-08-23       Impact factor: 41.582

2.  Architectural limits on split genes.

Authors:  D A Sterner; T Carlo; S M Berget
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

3.  A two-step mechanism for 5' and 3' splice-site pairing.

Authors:  M D Chiara; R Reed
Journal:  Nature       Date:  1995-06-08       Impact factor: 49.962

4.  The U5 and U6 small nuclear RNAs as active site components of the spliceosome.

Authors:  E J Sontheimer; J A Steitz
Journal:  Science       Date:  1993-12-24       Impact factor: 47.728

5.  During in vivo maturation of eukaryotic nuclear mRNA, splicing yields excised exon circles.

Authors:  B Bailleul
Journal:  Nucleic Acids Res       Date:  1996-03-15       Impact factor: 16.971

6.  U4/U5/U6 snRNP recognizes the 5' splice site in the absence of U2 snRNP.

Authors:  B B Konforti; M M Konarska
Journal:  Genes Dev       Date:  1994-08-15       Impact factor: 11.361

7.  Intramolecular structure in yeast introns aids the early steps of in vitro spliceosome assembly.

Authors:  B Charpentier; M Rosbash
Journal:  RNA       Date:  1996-06       Impact factor: 4.942

8.  Scanning and competition between AGs are involved in 3' splice site selection in mammalian introns.

Authors:  C W Smith; T T Chu; B Nadal-Ginard
Journal:  Mol Cell Biol       Date:  1993-08       Impact factor: 4.272

9.  Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5' splice site.

Authors:  C H Kim; J Abelson
Journal:  RNA       Date:  1996-10       Impact factor: 4.942

10.  Effects of secondary structure on pre-mRNA splicing: hairpins sequestering the 5' but not the 3' splice site inhibit intron processing in Nicotiana plumbaginifolia.

Authors:  H X Liu; G J Goodall; R Kole; W Filipowicz
Journal:  EMBO J       Date:  1995-01-16       Impact factor: 11.598

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  84 in total

1.  CEF1/CDC5 alleles modulate transitions between catalytic conformations of the spliceosome.

Authors:  Charles C Query; Maria M Konarska
Journal:  RNA       Date:  2012-03-08       Impact factor: 4.942

2.  The RNA polymerase C-terminal domain: a new role in spliceosome assembly.

Authors:  Charles J David; James L Manley
Journal:  Transcription       Date:  2011 Sep-Oct

3.  Structure of the yeast U2/U6 snRNA complex.

Authors:  Jordan E Burke; Dipali G Sashital; Xiaobing Zuo; Yun-Xing Wang; Samuel E Butcher
Journal:  RNA       Date:  2012-02-10       Impact factor: 4.942

4.  An antisense microwalk reveals critical role of an intronic position linked to a unique long-distance interaction in pre-mRNA splicing.

Authors:  Natalia N Singh; Katrin Hollinger; Dhruva Bhattacharya; Ravindra N Singh
Journal:  RNA       Date:  2010-04-22       Impact factor: 4.942

5.  DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps.

Authors:  Chi-Kang Tseng; Hsueh-Lien Liu; Soo-Chen Cheng
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

Review 6.  Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control.

Authors:  Defne E Egecioglu; Guillaume Chanfreau
Journal:  RNA       Date:  2011-01-04       Impact factor: 4.942

7.  RNA splicing and debranching viewed through analysis of RNA lariats.

Authors:  Zhi Cheng; Thomas M Menees
Journal:  Mol Genet Genomics       Date:  2011-11-08       Impact factor: 3.291

8.  A U1-U2 snRNP interaction network during intron definition.

Authors:  Wei Shao; Hyun-Soo Kim; Yang Cao; Yong-Zhen Xu; Charles C Query
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

Review 9.  RNA modifications and structures cooperate to guide RNA-protein interactions.

Authors:  Cole J T Lewis; Tao Pan; Auinash Kalsotra
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

Review 10.  Structural and functional characteristics of oestrogen receptor β splice variants: Implications for the ageing brain.

Authors:  C K Kim; A Torcaso; A Asimes; W C J Chung; T R Pak
Journal:  J Neuroendocrinol       Date:  2018-02       Impact factor: 3.627

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