Literature DB >> 18570877

A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release.

Beate Schwer1.   

Abstract

An essential step in pre-mRNA splicing is the release of the mRNA product from the spliceosome. The DEAH box RNA helicase Prp22 catalyzes mRNA release by remodeling contacts within the spliceosome that involve the U5 snRNP. Spliceosome disassembly requires a segment of more than 13 ribonucleotides downstream of the 3' splice site. I show here by site-specific crosslinking and RNase H protection that Prp22 interacts with the mRNA downstream of the exon-exon junction prior to mRNA release. The findings support a model for Prp22-catalyzed mRNA release from the spliceosome wherein a rearrangement that accompanies the second transesterification step deposits Prp22 on the mRNA downstream of the exon-exon junction. Bound to its target RNA, the 3'-->5' helicase acts to disrupt mRNA/U5 snRNP contacts, thereby liberating the mRNA from the spliceosome.

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Year:  2008        PMID: 18570877      PMCID: PMC2465764          DOI: 10.1016/j.molcel.2008.05.003

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  48 in total

1.  ATP-dependent remodeling of the spliceosome: intragenic suppressors of release-defective mutants of Saccharomyces cerevisiae Prp22.

Authors:  Eva Campodonico; Beate Schwer
Journal:  Genetics       Date:  2002-02       Impact factor: 4.562

2.  Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16.

Authors:  Susanne Schneider; Hans-Rudolf Hotz; Beate Schwer
Journal:  J Biol Chem       Date:  2002-02-20       Impact factor: 5.157

3.  5' exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly.

Authors:  Vienna L Reichert; Hervé Le Hir; Melissa S Jurica; Melissa J Moore
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

4.  Spatial organization of protein-RNA interactions in the branch site-3' splice site region during pre-mRNA splicing in yeast.

Authors:  David S McPheeters; Peggy Muhlenkamp
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

5.  Protein displacement by DExH/D "RNA helicases" without duplex unwinding.

Authors:  Margaret E Fairman; Patricia A Maroney; Wen Wang; Heath A Bowers; Paul Gollnick; Timothy W Nilsen; Eckhard Jankowsky
Journal:  Science       Date:  2004-04-30       Impact factor: 47.728

6.  Backbone tracking by the SF2 helicase NPH-II.

Authors:  Jane Kawaoka; Eckhard Jankowsky; Anna Marie Pyle
Journal:  Nat Struct Mol Biol       Date:  2004-05-16       Impact factor: 15.369

7.  RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2.

Authors:  Jayakrishnan Nandakumar; C Kiong Ho; Christopher D Lima; Stewart Shuman
Journal:  J Biol Chem       Date:  2004-04-13       Impact factor: 5.157

8.  Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome.

Authors:  Arnold Martin; Susanne Schneider; Beate Schwer
Journal:  J Biol Chem       Date:  2002-03-08       Impact factor: 5.157

9.  Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8.

Authors:  Susanne Schneider; Eva Campodonico; Beate Schwer
Journal:  J Biol Chem       Date:  2003-12-19       Impact factor: 5.157

10.  How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing.

Authors:  Shelly-Ann James; William Turner; Beate Schwer
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

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  61 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

Review 2.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

3.  DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps.

Authors:  Chi-Kang Tseng; Hsueh-Lien Liu; Soo-Chen Cheng
Journal:  RNA       Date:  2010-11-22       Impact factor: 4.942

4.  Eye on RNA unwinding.

Authors:  David A Brow
Journal:  Nat Struct Mol Biol       Date:  2009-01       Impact factor: 15.369

Review 5.  Splicing fidelity: DEAD/H-box ATPases as molecular clocks.

Authors:  Prakash Koodathingal; Jonathan P Staley
Journal:  RNA Biol       Date:  2013-06-03       Impact factor: 4.652

6.  Spliceosomal DEAH-Box ATPases Remodel Pre-mRNA to Activate Alternative Splice Sites.

Authors:  Daniel R Semlow; Mario R Blanco; Nils G Walter; Jonathan P Staley
Journal:  Cell       Date:  2016-02-25       Impact factor: 41.582

7.  Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing.

Authors:  Rea M Lardelli; James X Thompson; John R Yates; Scott W Stevens
Journal:  RNA       Date:  2010-01-20       Impact factor: 4.942

8.  The splice is right: guarantors of fidelity in pre-mRNA splicing.

Authors:  David S Horowitz
Journal:  RNA       Date:  2011-02-28       Impact factor: 4.942

Review 9.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

10.  SKIP counteracts p53-mediated apoptosis via selective regulation of p21Cip1 mRNA splicing.

Authors:  Yupeng Chen; Lirong Zhang; Katherine A Jones
Journal:  Genes Dev       Date:  2011-04-01       Impact factor: 11.361

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