Literature DB >> 19158787

Small RNAs in transcriptional gene silencing and genome defence.

Danesh Moazed1.   

Abstract

Small RNA molecules of about 20-30 nucleotides have emerged as powerful regulators of gene expression and genome stability. Studies in fission yeast and multicellular organisms suggest that effector complexes, directed by small RNAs, target nascent chromatin-bound non-coding RNAs and recruit chromatin-modifying complexes. Interactions between small RNAs and nascent non-coding transcripts thus reveal a new mechanism for targeting chromatin-modifying complexes to specific chromosome regions and suggest possibilities for how the resultant chromatin states may be inherited during the process of chromosome duplication.

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Year:  2009        PMID: 19158787      PMCID: PMC3246369          DOI: 10.1038/nature07756

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  100 in total

Review 1.  Revealing the world of RNA interference.

Authors:  Craig C Mello; Darryl Conte
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

2.  Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

Authors:  Mohammad R Motamedi; André Verdel; Serafin U Colmenares; Scott A Gerber; Steven P Gygi; Danesh Moazed
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

3.  Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes.

Authors:  Toshiaki Watanabe; Atsushi Takeda; Tomoyuki Tsukiyama; Kazuyuki Mise; Tetsuro Okuno; Hiroyuki Sasaki; Naojiro Minami; Hiroshi Imai
Journal:  Genes Dev       Date:  2006-06-09       Impact factor: 11.361

4.  Chp1-Tas3 interaction is required to recruit RITS to fission yeast centromeres and for maintenance of centromeric heterochromatin.

Authors:  Jennifer L Debeauchamp; Arian Moses; Victoria J P Noffsinger; Dagny L Ulrich; Godwin Job; Aaron M Kosinski; Janet F Partridge
Journal:  Mol Cell Biol       Date:  2008-01-22       Impact factor: 4.272

5.  RNA interference guides histone modification during the S phase of chromosomal replication.

Authors:  Anna Kloc; Mikel Zaratiegui; Elphege Nora; Rob Martienssen
Journal:  Curr Biol       Date:  2008-04-08       Impact factor: 10.834

6.  RNA-directed de novo methylation of genomic sequences in plants.

Authors:  M Wassenegger; S Heimes; L Riedel; H L Sänger
Journal:  Cell       Date:  1994-02-11       Impact factor: 41.582

7.  Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation.

Authors:  Girish Deshpande; Gretchen Calhoun; Paul Schedl
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

8.  RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.

Authors:  Yifan Liu; Sean D Taverna; Tara L Muratore; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Genes Dev       Date:  2007-06-15       Impact factor: 11.361

9.  Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene.

Authors:  Emeline Sarot; Geneviève Payen-Groschêne; Alain Bucheton; Alain Pélisson
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

10.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

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  327 in total

1.  Nucleus-localized antisense small RNAs with 5'-polyphosphate termini regulate long term transcriptional gene silencing in Entamoeba histolytica G3 strain.

Authors:  Hanbang Zhang; Hussein Alramini; Vy Tran; Upinder Singh
Journal:  J Biol Chem       Date:  2011-11-02       Impact factor: 5.157

Review 2.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

Authors:  Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

Review 3.  Epigenetic control on cell fate choice in neural stem cells.

Authors:  Xiao-Ling Hu; Yuping Wang; Qin Shen
Journal:  Protein Cell       Date:  2012-05-02       Impact factor: 14.870

4.  Chimeric antisense RNA derived from chromosomal translocation modulates target gene expression.

Authors:  Takumi Sugimoto; Akihiro Tomita; Akihiro Abe; Chisako Iriyama; Hitoshi Kiyoi; Tomoki Naoe
Journal:  Haematologica       Date:  2012-04-04       Impact factor: 9.941

5.  Heterochromatin protein 1 homologue Swi6 acts in concert with Ers1 to regulate RNAi-directed heterochromatin assembly.

Authors:  Aki Hayashi; Mayumi Ishida; Rika Kawaguchi; Takeshi Urano; Yota Murakami; Jun-ichi Nakayama
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

6.  Elevation of highly up-regulated in liver cancer (HULC) by hepatitis B virus X protein promotes hepatoma cell proliferation via down-regulating p18.

Authors:  Yumei Du; Guangyao Kong; Xiaona You; Shuai Zhang; Tao Zhang; Yuen Gao; Lihong Ye; Xiaodong Zhang
Journal:  J Biol Chem       Date:  2012-06-08       Impact factor: 5.157

Review 7.  The X as model for RNA's niche in epigenomic regulation.

Authors:  Jeannie T Lee
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-31       Impact factor: 10.005

8.  Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts.

Authors:  Tiffany A Reese; Jing Xia; L Steven Johnson; Xiang Zhou; Weixiong Zhang; Herbert W Virgin
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

Review 9.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans.

Authors:  Sarah E Hall; Gung-Wei Chirn; Nelson C Lau; Piali Sengupta
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

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