Literature DB >> 19158785

On the road to reading the RNA-interference code.

Haruhiko Siomi1, Mikiko C Siomi.   

Abstract

The finding that sequence-specific gene silencing occurs in response to the presence of double-stranded RNAs has had an enormous impact on biology, uncovering an unsuspected level of regulation of gene expression. This process, known as RNA interference (RNAi) or RNA silencing, involves small non-coding RNAs, which associate with nuclease-containing regulatory complexes and then pair with complementary messenger RNA targets, thereby preventing the expression of these mRNAs. Remarkable progress has been made towards understanding the underlying mechanisms of RNAi, raising the prospect of deciphering the 'RNAi code' that, like transcription factors, allows the fine-tuning and networking of complex suites of gene activity, thereby specifying cellular physiology and development.

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Year:  2009        PMID: 19158785     DOI: 10.1038/nature07754

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  100 in total

Review 1.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

2.  Mouse Piwi-interacting RNAs are 2'-O-methylated at their 3' termini.

Authors:  Yohei Kirino; Zissimos Mourelatos
Journal:  Nat Struct Mol Biol       Date:  2007-03-25       Impact factor: 15.369

3.  Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.

Authors:  Tetsushi Iida; Rika Kawaguchi; Jun-ichi Nakayama
Journal:  Curr Biol       Date:  2006-06-22       Impact factor: 10.834

4.  Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation.

Authors:  Tim A Rand; Sean Petersen; Fenghe Du; Xiaodong Wang
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

5.  Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes.

Authors:  Xiang Liu; Feng Jiang; Savitha Kalidas; Dean Smith; Qinghua Liu
Journal:  RNA       Date:  2006-06-14       Impact factor: 4.942

6.  A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment.

Authors:  Agnieszka Rybak; Heiko Fuchs; Lena Smirnova; Christine Brandt; Elena E Pohl; Robert Nitsch; F Gregory Wulczyn
Journal:  Nat Cell Biol       Date:  2008-07-06       Impact factor: 28.824

7.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

8.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  Selective blockade of microRNA processing by Lin28.

Authors:  Srinivas R Viswanathan; George Q Daley; Richard I Gregory
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

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  229 in total

1.  DNA methylation and histone H3-K9 modifications contribute to MUC17 expression.

Authors:  Sho Kitamoto; Norishige Yamada; Seiya Yokoyama; Izumi Houjou; Michiyo Higashi; Masamichi Goto; Surinder K Batra; Suguru Yonezawa
Journal:  Glycobiology       Date:  2010-10-06       Impact factor: 4.313

2.  Development of a siRNA and shRNA screening system based on a kinase fusion protein.

Authors:  Sofie Pieraets; Luk Cox; Olga Gielen; Jan Cools
Journal:  RNA       Date:  2012-04-26       Impact factor: 4.942

3.  Precursor microRNA-programmed silencing complex assembly pathways in mammals.

Authors:  Xuhang Liu; Dong-Yan Jin; Michael T McManus; Zissimos Mourelatos
Journal:  Mol Cell       Date:  2012-04-12       Impact factor: 17.970

Review 4.  Epigenetic programming and risk: the birthplace of cardiovascular disease?

Authors:  Maria Cristina Vinci; Gianluca Polvani; Maurizio Pesce
Journal:  Stem Cell Rev Rep       Date:  2013-06       Impact factor: 5.739

5.  In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa.

Authors:  Antti P Aalto; Minna M Poranen; Jonathan M Grimes; David I Stuart; Dennis H Bamford
Journal:  J Biol Chem       Date:  2010-07-20       Impact factor: 5.157

Review 6.  Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production.

Authors:  Keita Miyoshi; Tomohiro Miyoshi; Haruhiko Siomi
Journal:  Mol Genet Genomics       Date:  2010-07-02       Impact factor: 3.291

7.  Initiation by a eukaryotic RNA-dependent RNA polymerase requires looping of the template end and is influenced by the template-tailing activity of an associated uridyltransferase.

Authors:  Kristin Benjamin Talsky; Kathleen Collins
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

8.  RNA-mediated trans-communication can establish paramutation at the b1 locus in maize.

Authors:  Mario Arteaga-Vazquez; Lyudmila Sidorenko; Fernando A Rabanal; Roli Shrivistava; Kan Nobuta; Pamela J Green; Blake C Meyers; Vicki L Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-29       Impact factor: 11.205

9.  A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo.

Authors:  Mary T Couvillion; Ravi Sachidanandam; Kathleen Collins
Journal:  Genes Dev       Date:  2010-11-24       Impact factor: 11.361

10.  PRMT1 methylates the single Argonaute of Toxoplasma gondii and is important for the recruitment of Tudor nuclease for target RNA cleavage by antisense guide RNA.

Authors:  Alla Musiyenko; Tanmay Majumdar; Joel Andrews; Brian Adams; Sailen Barik
Journal:  Cell Microbiol       Date:  2012-02-28       Impact factor: 3.715

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