Literature DB >> 20596726

Many ways to generate microRNA-like small RNAs: non-canonical pathways for microRNA production.

Keita Miyoshi1, Tomohiro Miyoshi, Haruhiko Siomi.   

Abstract

MicroRNAs (miRNAs) are an abundant class of small non-coding RNAs that collectively regulate the expression of a large number of mRNAs by either promoting destabilization or repressing translation, or both. Therefore, they play a major role in shaping the transcriptomes and proteomes of eukaryotic organisms. Typically, animal miRNAs are produced from long primary transcripts with one or more of hairpin structures by two sequential processing reactions: one by Drosha in the nucleus and the other by Dicer in the cytoplasm. However, deviations from this paradigm have been observed: subclasses of miRNAs, which only partially meet the classical definition of a miRNA, are derived by alternative biogenesis pathways, thereby providing an additional level of complexity to miRNA-dependent regulation of gene expression.

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Year:  2010        PMID: 20596726     DOI: 10.1007/s00438-010-0556-1

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  83 in total

1.  The road to RNase P.

Authors:  S Altman
Journal:  Nat Struct Biol       Date:  2000-10

Review 2.  Posttranscriptional regulation of microRNA biogenesis in animals.

Authors:  Haruhiko Siomi; Mikiko C Siomi
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

3.  The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila.

Authors:  Katsutomo Okamura; Joshua W Hagen; Hong Duan; David M Tyler; Eric C Lai
Journal:  Cell       Date:  2007-06-28       Impact factor: 41.582

Review 4.  microRNA functions.

Authors:  Natascha Bushati; Stephen M Cohen
Journal:  Annu Rev Cell Dev Biol       Date:  2007       Impact factor: 13.827

Review 5.  On the road to reading the RNA-interference code.

Authors:  Haruhiko Siomi; Mikiko C Siomi
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

Review 6.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

7.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

8.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

9.  Structural insights into RNA processing by the human RISC-loading complex.

Authors:  Hong-Wei Wang; Cameron Noland; Bunpote Siridechadilok; David W Taylor; Enbo Ma; Karin Felderer; Jennifer A Doudna; Eva Nogales
Journal:  Nat Struct Mol Biol       Date:  2009-10-11       Impact factor: 15.369

10.  Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA* strands in flies.

Authors:  Hervé Seitz; Megha Ghildiyal; Phillip D Zamore
Journal:  Curr Biol       Date:  2008-01-22       Impact factor: 10.834

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  89 in total

1.  Precursor miR-886, a novel noncoding RNA repressed in cancer, associates with PKR and modulates its activity.

Authors:  Kwanbok Lee; Nawapol Kunkeaw; Sung Ho Jeon; Inhan Lee; Betty H Johnson; Gum-Yong Kang; Joo Young Bang; Hyung Soon Park; Chanvit Leelayuwat; Yong Sun Lee
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

Review 2.  Crosstalk between the DNA damage response pathway and microRNAs.

Authors:  Cecil Han; Guohui Wan; Robert R Langley; Xinna Zhang; Xiongbin Lu
Journal:  Cell Mol Life Sci       Date:  2012-03-20       Impact factor: 9.261

Review 3.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

4.  TALEN-based knockout library for human microRNAs.

Authors:  Young-Kook Kim; Gabbine Wee; Joha Park; Jongkyu Kim; Daehyun Baek; Jin-Soo Kim; V Narry Kim
Journal:  Nat Struct Mol Biol       Date:  2013-11-10       Impact factor: 15.369

Review 5.  Amyotrophic lateral sclerosis: mechanisms and therapeutics in the epigenomic era.

Authors:  Ximena Paez-Colasante; Claudia Figueroa-Romero; Stacey A Sakowski; Stephen A Goutman; Eva L Feldman
Journal:  Nat Rev Neurol       Date:  2015-04-21       Impact factor: 42.937

Review 6.  MicroRNAs and the regulation of aldosterone signaling in the kidney.

Authors:  Michael B Butterworth
Journal:  Am J Physiol Cell Physiol       Date:  2015-02-11       Impact factor: 4.249

7.  Wound-induced rgs-CaM gets ready for counterresponse to an early stage of viral infection.

Authors:  Kazuki Tadamura; Kenji S Nakahara; Chikara Masuta; Ichiro Uyeda
Journal:  Plant Signal Behav       Date:  2012-10-16

8.  Mechanistic insights on the Dicer-independent AGO2-mediated processing of AgoshRNAs.

Authors:  Ying Poi Liu; Margarete Karg; Alex Harwig; Elena Herrera-Carrillo; Aldo Jongejan; Antoine van Kampen; Ben Berkhout
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 9.  MicroRNAs in normal and psoriatic skin.

Authors:  Jing Xia; Weixiong Zhang
Journal:  Physiol Genomics       Date:  2013-12-10       Impact factor: 3.107

10.  miR-514a-3p functions as a tumor suppressor in renal cell carcinoma.

Authors:  Lu Jin; Yifan Li; Zeng Zhang; Tao He; Jia Hu; Jiaju Liu; Mingwei Chen; Yaoting Gui; Shangqi Yang; Xiangming Mao; Yun Chen; Yongqing Lai
Journal:  Oncol Lett       Date:  2017-08-31       Impact factor: 2.967

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