Literature DB >> 17716004

Exact simulation of integrate-and-fire models with exponential currents.

Romain Brette1.   

Abstract

Neural networks can be simulated exactly using event-driven strategies, in which the algorithm advances directly from one spike to the next spike. It applies to neuron models for which we have (1) an explicit expression for the evolution of the state variables between spikes and (2) an explicit test on the state variables that predicts whether and when a spike will be emitted. In a previous work, we proposed a method that allows exact simulation of an integrate-and-fire model with exponential conductances, with the constraint of a single synaptic time constant. In this note, we propose a method, based on polynomial root finding, that applies to integrate-and-fire models with exponential currents, with possibly many different synaptic time constants. Models can include biexponential synaptic currents and spike-triggered adaptation currents.

Mesh:

Year:  2007        PMID: 17716004     DOI: 10.1162/neco.2007.19.10.2604

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  11 in total

Review 1.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

2.  Voltage-stepping schemes for the simulation of spiking neural networks.

Authors:  G Zheng; A Tonnelier; D Martinez
Journal:  J Comput Neurosci       Date:  2008-11-26       Impact factor: 1.621

3.  A generalized linear integrate-and-fire neural model produces diverse spiking behaviors.

Authors:  Stefan Mihalaş; Ernst Niebur
Journal:  Neural Comput       Date:  2009-03       Impact factor: 2.026

4.  A Markovian event-based framework for stochastic spiking neural networks.

Authors:  Jonathan D Touboul; Olivier D Faugeras
Journal:  J Comput Neurosci       Date:  2011-04-16       Impact factor: 1.621

5.  Central Vestibular Tuning Arises from Patterned Convergence of Otolith Afferents.

Authors:  Zhikai Liu; Yukiko Kimura; Shin-Ichi Higashijima; David G C Hildebrand; Joshua L Morgan; Martha W Bagnall
Journal:  Neuron       Date:  2020-09-15       Impact factor: 17.173

6.  Locally Contractive Dynamics in Generalized Integrate-and-Fire Neurons.

Authors:  Nicolas D Jimenez; Stefan Mihalas; Richard Brown; Ernst Niebur; Jonathan Rubin
Journal:  SIAM J Appl Dyn Syst       Date:  2013-09-10       Impact factor: 2.316

7.  A general and efficient method for incorporating precise spike times in globally time-driven simulations.

Authors:  Alexander Hanuschkin; Susanne Kunkel; Moritz Helias; Abigail Morrison; Markus Diesmann
Journal:  Front Neuroinform       Date:  2010-10-05       Impact factor: 4.081

8.  Spiking neural network simulation: numerical integration with the Parker-Sochacki method.

Authors:  Robert D Stewart; Wyeth Bair
Journal:  J Comput Neurosci       Date:  2009-01-17       Impact factor: 1.621

9.  FNS allows efficient event-driven spiking neural network simulations based on a neuron model supporting spike latency.

Authors:  Gianluca Susi; Pilar Garcés; Emanuele Paracone; Alessandro Cristini; Mario Salerno; Fernando Maestú; Ernesto Pereda
Journal:  Sci Rep       Date:  2021-06-09       Impact factor: 4.379

10.  NEVESIM: event-driven neural simulation framework with a Python interface.

Authors:  Dejan Pecevski; David Kappel; Zeno Jonke
Journal:  Front Neuroinform       Date:  2014-08-14       Impact factor: 4.081

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