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Literature DB >> 19116609

Predicting free energy changes using structural ensembles.

Alexander Benedix, Caroline M Becker, Bert L de Groot, Amedeo Caflisch, Rainer A Böckmann.

Abstract

Mesh：

Substances：
Proteins

Year: 2009 PMID： 19116609 DOI： 10.1038/nmeth0109-3

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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6 in total

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3. The modular architecture of protein-protein binding interfaces.

Authors: D Reichmann; O Rahat; S Albeck; R Meged; O Dym; G Schreiber
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4. Eris: an automated estimator of protein stability.

Authors: Shuangye Yin; Feng Ding; Nikolay V Dokholyan
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5. Prediction of protein conformational freedom from distance constraints.

Authors: B L de Groot; D M van Aalten; R M Scheek; A Amadei; G Vriend; H J Berendsen
Journal: Proteins Date: 1997-10

6. A new method for predicting binding affinity in computer-aided drug design.

Authors: J Aqvist; C Medina; J E Samuelsson
Journal: Protein Eng Date: 1994-03

6 in total

91 in total

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2. SiteComp: a server for ligand binding site analysis in protein structures.

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3. Protein thermostability calculations using alchemical free energy simulations.

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Authors: Marc N Offman; Marcin Krol; Israel Silman; Joel L Sussman; Anthony H Futerman
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6. Crucial roles of single residues in binding affinity, specificity, and promiscuity in the cellulosomal cohesin-dockerin interface.

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Review 7. Designing specific protein-protein interactions using computation, experimental library screening, or integrated methods.

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