Literature DB >> 20643076

Structural insights into conformational stability of wild-type and mutant beta1-adrenergic receptor.

Gouthaman S Balaraman1, Supriyo Bhattacharya, Nagarajan Vaidehi.   

Abstract

Recent experiments to derive a thermally stable mutant of turkey beta-1-adrenergic receptor (beta1AR) have shown that a combination of six single point mutations resulted in a 20 degrees C increase in thermal stability in mutant beta1AR. Here we have used the all-atom force-field energy function to calculate a stability score to detect stabilizing point mutations in G-protein coupled receptors. The calculated stability score shows good correlation with the measured thermal stability for 76 single point mutations and 22 multiple mutants in beta1AR. We have demonstrated that conformational sampling of the receptor for various mutants improve the prediction of thermal stability by 50%. Point mutations Y227A5.58, V230A5.61, and F338M7.48 in the thermally stable mutant m23-beta1AR stabilizes key microdomains of the receptor in the inactive conformation. The Y227A5.58 and V230A5.61 mutations stabilize the ionic lock between R139(3.50) on transmembrane helix3 and E285(6.30) on transmembrane helix6. The mutation F338M7.48 on TM7 alters the interaction of the conserved motif NPxxY(x)5,6F with helix8 and hence modulates the interaction of TM2-TM7-helix8 microdomain. The D186-R317 salt bridge (in extracellular loops 2 and 3) is stabilized in the cyanopindolol-bound wild-type beta1AR, whereas the salt bridge between D184-R317 is preferred in the mutant m23. We propose that this could be the surrogate to a similar salt bridge found between the extracellular loop 2 and TM7 in beta2AR reported recently. We show that the binding energy difference between the inactive and active states is less in m23 compared to the wild-type, which explains the activation of m23 at higher norepinephrine concentration compared to the wild-type. Results from this work throw light into the mechanism behind stabilizing mutations. The computational scheme proposed in this work could be used to design stabilizing mutations for other G-protein coupled receptors. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20643076      PMCID: PMC2905111          DOI: 10.1016/j.bpj.2010.04.075

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.

Authors:  Olaf Fritze; Sławomir Filipek; Vladimir Kuksa; Krzysztof Palczewski; Klaus Peter Hofmann; Oliver P Ernst
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

Review 2.  Computer-based design of novel protein structures.

Authors:  Glenn L Butterfoss; Brian Kuhlman
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

3.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

4.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

5.  Transferability of thermostabilizing mutations between beta-adrenergic receptors.

Authors:  Maria J Serrano-Vega; Christopher G Tate
Journal:  Mol Membr Biol       Date:  2009-12       Impact factor: 2.857

6.  Computational mapping of the conformational transitions in agonist selective pathways of a G-protein coupled receptor.

Authors:  Supriyo Bhattacharya; Nagarajan Vaidehi
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

7.  The forgotten serine. A critical role for Ser-2035.42 in ligand binding to and activation of the beta 2-adrenergic receptor.

Authors:  G Liapakis; J A Ballesteros; S Papachristou; W C Chan; X Chen; J A Javitch
Journal:  J Biol Chem       Date:  2000-12-01       Impact factor: 5.157

Review 8.  The structure and function of G-protein-coupled receptors.

Authors:  Daniel M Rosenbaum; Søren G F Rasmussen; Brian K Kobilka
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

9.  Ligand-stabilized conformational states of human beta(2) adrenergic receptor: insight into G-protein-coupled receptor activation.

Authors:  Supriyo Bhattacharya; Spencer E Hall; Hubert Li; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

10.  Involvement of Asn-293 in stereospecific agonist recognition and in activation of the beta 2-adrenergic receptor.

Authors:  K Wieland; H M Zuurmond; C Krasel; A P Ijzerman; M J Lohse
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

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  12 in total

Review 1.  Lifting the lid on GPCRs: the role of extracellular loops.

Authors:  M Wheatley; D Wootten; M T Conner; J Simms; R Kendrick; R T Logan; D R Poyner; J Barwell
Journal:  Br J Pharmacol       Date:  2012-03       Impact factor: 8.739

2.  Prediction of Conformation Specific Thermostabilizing Mutations for Class A G Protein-Coupled Receptors.

Authors:  Suvamay Jana; Soumadwip Ghosh; Sanychen Muk; Benjamin Levy; Nagarajan Vaidehi
Journal:  J Chem Inf Model       Date:  2019-08-27       Impact factor: 4.956

3.  Machine Learning for Prioritization of Thermostabilizing Mutations for G-Protein Coupled Receptors.

Authors:  Sanychen Muk; Soumadwip Ghosh; Srisairam Achuthan; Xiaomin Chen; XiaoJie Yao; Manbir Sandhu; Matthew C Griffor; Kimberly F Fennell; Ye Che; Veerabahu Shanmugasundaram; Xiayang Qiu; Christopher G Tate; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2019-10-24       Impact factor: 4.033

4.  Engineering Salt Bridge Networks between Transmembrane Helices Confers Thermostability in G-Protein-Coupled Receptors.

Authors:  Soumadwip Ghosh; Tobias Bierig; Sangbae Lee; Suvamay Jana; Adelheid Löhle; Gisela Schnapp; Christofer S Tautermann; Nagarajan Vaidehi
Journal:  J Chem Theory Comput       Date:  2018-11-06       Impact factor: 6.006

5.  The pharmacological effects of the thermostabilising (m23) mutations and intra and extracellular (β36) deletions essential for crystallisation of the turkey β-adrenoceptor.

Authors:  Jillian G Baker; Richard G W Proudman; Christopher G Tate
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2011-05-06       Impact factor: 3.000

6.  Sequence coevolution and structure stabilization modulate olfactory receptor expression.

Authors:  Soumadwip Ghosh; Claire A de March; Sergio Branciamore; Sahar Kaleem; Hiroaki Matsunami; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2022-01-20       Impact factor: 4.033

7.  The structural basis for agonist and partial agonist action on a β(1)-adrenergic receptor.

Authors:  Tony Warne; Rouslan Moukhametzianov; Jillian G Baker; Rony Nehmé; Patricia C Edwards; Andrew G W Leslie; Gebhard F X Schertler; Christopher G Tate
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

Review 8.  Action of molecular switches in GPCRs--theoretical and experimental studies.

Authors:  B Trzaskowski; D Latek; S Yuan; U Ghoshdastider; A Debinski; S Filipek
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

Review 9.  How Can Mutations Thermostabilize G-Protein-Coupled Receptors?

Authors:  Nagarajan Vaidehi; Reinhard Grisshammer; Christopher G Tate
Journal:  Trends Pharmacol Sci       Date:  2015-11-05       Impact factor: 14.819

10.  Thermostabilization of the β1-adrenergic receptor correlates with increased entropy of the inactive state.

Authors:  Michiel J M Niesen; Supriyo Bhattacharya; Reinhard Grisshammer; Christopher G Tate; Nagarajan Vaidehi
Journal:  J Phys Chem B       Date:  2013-06-05       Impact factor: 2.991

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