Literature DB >> 19109973

HisE11 and HisF8 provide bis-histidyl heme hexa-coordination in the globin domain of Geobacter sulfurreducens globin-coupled sensor.

Alessandra Pesce1, Liesbet Thijs, Marco Nardini, Filip Desmet, Lorenza Sisinni, Louise Gourlay, Alessandro Bolli, Massimiliano Coletta, Sabine Van Doorslaer, Xuehua Wan, Maqsudul Alam, Paolo Ascenzi, Luc Moens, Martino Bolognesi, Sylvia Dewilde.   

Abstract

Among heme-based sensors, recent phylogenomic and sequence analyses have identified 34 globin coupled sensors (GCS), to which an aerotactic or gene-regulating function has been tentatively ascribed. Here, the structural and biochemical characterization of the globin domain of the GCS from Geobacter sulfurreducens (GsGCS(162)) is reported. A combination of X-ray crystallography (crystal structure at 1.5 A resolution), UV-vis and resonance Raman spectroscopy reveals the ferric GsGCS(162) as an example of bis-histidyl hexa-coordinated GCS. In contrast to the known hexa-coordinated globins, the distal heme-coordination in ferric GsGCS(162) is provided by a His residue unexpectedly located at the E11 topological site. Furthermore, UV-vis and resonance Raman spectroscopy indicated that ferrous deoxygenated GsGCS(162) is a penta-/hexa-coordinated mixture, and the heme hexa-to-penta-coordination transition does not represent a rate-limiting step for carbonylation kinetics. Lastly, electron paramagnetic resonance indicates that ferrous nitrosylated GsGCS(162) is a penta-coordinated species, where the proximal HisF8-Fe bond is severed.

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Year:  2008        PMID: 19109973     DOI: 10.1016/j.jmb.2008.12.023

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

1.  Disruption of the dimerization interface of the sensing domain in the dimeric heme-based oxygen sensor AfGcHK abolishes bacterial signal transduction.

Authors:  Tereza Skalova; Alzbeta Lengalova; Jan Dohnalek; Karl Harlos; Peter Mihalcin; Petr Kolenko; Martin Stranava; Jan Blaha; Toru Shimizu; Markéta Martínková
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

2.  Identification and functional and spectral characterization of a globin-coupled histidine kinase from Anaeromyxobacter sp. Fw109-5.

Authors:  Kenichi Kitanishi; Kazuo Kobayashi; Takeshi Uchida; Koichiro Ishimori; Jotaro Igarashi; Toru Shimizu
Journal:  J Biol Chem       Date:  2011-08-18       Impact factor: 5.157

3.  Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction.

Authors:  Martin Stranava; Petr Man; Tereza Skálová; Petr Kolenko; Jan Blaha; Veronika Fojtikova; Václav Martínek; Jan Dohnálek; Alzbeta Lengalova; Michal Rosůlek; Toru Shimizu; Markéta Martínková
Journal:  J Biol Chem       Date:  2017-11-01       Impact factor: 5.157

4.  Structure and properties of a bis-histidyl ligated globin from Caenorhabditis elegans.

Authors:  Jungjoo Yoon; Mark A Herzik; Michael B Winter; Rosalie Tran; Charles Olea; Michael A Marletta
Journal:  Biochemistry       Date:  2010-07-13       Impact factor: 3.162

5.  Chemical reactivity of Synechococcus sp. PCC 7002 and Synechocystis sp. PCC 6803 hemoglobins: covalent heme attachment and bishistidine coordination.

Authors:  Henry J Nothnagel; Matthew R Preimesberger; Matthew P Pond; Benjamin Y Winer; Emily M Adney; Juliette T J Lecomte
Journal:  J Biol Inorg Chem       Date:  2011-01-15       Impact factor: 3.358

Review 6.  Heme-based globin-coupled oxygen sensors: linking oxygen binding to functional regulation of diguanylate cyclase, histidine kinase, and methyl-accepting chemotaxis.

Authors:  Markéta Martínková; Kenichi Kitanishi; Toru Shimizu
Journal:  J Biol Chem       Date:  2013-08-08       Impact factor: 5.157

Review 7.  Mechanism and Role of Globin-Coupled Sensor Signalling.

Authors:  Johnnie A Walker; Shannon Rivera; Emily E Weinert
Journal:  Adv Microb Physiol       Date:  2017-07-06       Impact factor: 3.517

8.  Heme binding properties of glyceraldehyde-3-phosphate dehydrogenase.

Authors:  Luciana Hannibal; Daniel Collins; Julie Brassard; Ritu Chakravarti; Rajesh Vempati; Pierre Dorlet; Jérôme Santolini; John H Dawson; Dennis J Stuehr
Journal:  Biochemistry       Date:  2012-10-15       Impact factor: 3.162

Review 9.  Conservation of the three-dimensional structure in non-homologous or unrelated proteins.

Authors:  Konstantinos Sousounis; Carl E Haney; Jin Cao; Bharath Sunchu; Panagiotis A Tsonis
Journal:  Hum Genomics       Date:  2012-08-02       Impact factor: 4.639

10.  Structure and haem-distal site plasticity in Methanosarcina acetivorans protoglobin.

Authors:  Alessandra Pesce; Lesley Tilleman; Joke Donné; Elisa Aste; Paolo Ascenzi; Chiara Ciaccio; Massimo Coletta; Luc Moens; Cristiano Viappiani; Sylvia Dewilde; Martino Bolognesi; Marco Nardini
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

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