Literature DB >> 22957700

Heme binding properties of glyceraldehyde-3-phosphate dehydrogenase.

Luciana Hannibal1, Daniel Collins, Julie Brassard, Ritu Chakravarti, Rajesh Vempati, Pierre Dorlet, Jérôme Santolini, John H Dawson, Dennis J Stuehr.   

Abstract

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a glycolytic enzyme that also functions in transcriptional regulation, oxidative stress, vesicular trafficking, and apoptosis. Because GAPDH is required for the insertion of cellular heme into inducible nitric oxide synthase [Chakravarti, R., et al. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 18004-18009], we extensively characterized the heme binding properties of GAPDH. Substoichiometric amounts of ferric heme bound to GAPDH (one heme per GAPDH tetramer) to form a low-spin complex with UV-visible maxima at 362, 418, and 537 nm and when reduced to ferrous gave maxima at 424, 527, and 559 nm. Ferric heme association and dissociation rate constants at 10 °C were as follows: k(on) = 17800 M(-1) s(-1), k(off1) = 7.0 × 10(-3) s(-1), and k(off2) = 3.3 × 10(-4) s(-1) (giving approximate affinities of 19-390 nM). Ferrous heme bound more poorly to GAPDH and dissociated with a k(off) of 4.2 × 10(-3) s(-1). Magnetic circular dichroism, resonance Raman, and electron paramagnetic resonance spectroscopic data on the ferric, ferrous, and ferrous-CO complexes of GAPDH showed that the heme is bis-ligated with His as the proximal ligand. The distal ligand in the ferric complex was not displaced by CN(-) or N(3)(-) but in the ferrous complex could be displaced by CO at a rate of 1.75 s(-1) (for >0.2 mM CO). Studies with heme analogues revealed selectivity toward the coordinating metal and porphyrin ring structure. The GAPDH-heme complex was isolated from bacteria induced to express rabbit GAPDH in the presence of δ-aminolevulinic acid. Our finding of heme binding to GAPDH expands the protein's potential roles. The strength, selectivity, reversibility, and redox sensitivity of heme binding to GAPDH are consistent with it performing heme sensing or heme chaperone-like functions in cells.

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Year:  2012        PMID: 22957700      PMCID: PMC3549054          DOI: 10.1021/bi300863a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  84 in total

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4.  Heme binding to the Mammalian circadian clock protein period 2 is nonspecific.

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7.  HisE11 and HisF8 provide bis-histidyl heme hexa-coordination in the globin domain of Geobacter sulfurreducens globin-coupled sensor.

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9.  Alteration of axial coordination by protein engineering in myoglobin. Bisimidazole ligation in the His64-->Val/Val68-->His double mutant.

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10.  Structural analysis of heme proteins: implications for design and prediction.

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Journal:  BMC Struct Biol       Date:  2011-03-03
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  23 in total

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Authors:  David A Hanna; Osiris Martinez-Guzman; Amit R Reddi
Journal:  Biochemistry       Date:  2017-03-27       Impact factor: 3.162

Review 2.  Heme transport and erythropoiesis.

Authors:  Xiaojing Yuan; Mark D Fleming; Iqbal Hamza
Journal:  Curr Opin Chem Biol       Date:  2013-02-14       Impact factor: 8.822

3.  The radical SAM protein HemW is a heme chaperone.

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Journal:  J Biol Chem       Date:  2017-12-27       Impact factor: 5.157

4.  GAPDH delivers heme to soluble guanylyl cyclase.

Authors:  Yue Dai; Elizabeth A Sweeny; Simon Schlanger; Arnab Ghosh; Dennis J Stuehr
Journal:  J Biol Chem       Date:  2020-04-30       Impact factor: 5.157

5.  The role of posttranslational modification in moonlighting glyceraldehyde-3-phosphate dehydrogenase structure and function.

Authors:  Michael A Sirover
Journal:  Amino Acids       Date:  2021-03-02       Impact factor: 3.520

6.  Characterization of the complex between native and reduced bovine serum albumin with aquacobalamin and evidence of dual tetrapyrrole binding.

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Journal:  J Biol Inorg Chem       Date:  2018-05-02       Impact factor: 3.358

7.  High-resolution crystal structures of the photoreceptor glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with three and four-bound NAD molecules.

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Review 8.  The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein.

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Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-12       Impact factor: 9.957

Review 9.  Structural analysis of glyceraldehyde-3-phosphate dehydrogenase functional diversity.

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10.  Human ribosomal G-quadruplexes regulate heme bioavailability.

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Journal:  J Biol Chem       Date:  2020-08-13       Impact factor: 5.157

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