Literature DB >> 21852234

Identification and functional and spectral characterization of a globin-coupled histidine kinase from Anaeromyxobacter sp. Fw109-5.

Kenichi Kitanishi1, Kazuo Kobayashi, Takeshi Uchida, Koichiro Ishimori, Jotaro Igarashi, Toru Shimizu.   

Abstract

Two-component signal transduction systems regulate numerous important physiological functions in bacteria. In this study we have identified, cloned, overexpressed, and characterized a dimeric full-length heme-bound (heme:protein, 1:1 stoichiometry) globin-coupled histidine kinase (AfGcHK) from Anaeromyxobacter sp. strain Fw109-5 for the first time. The Fe(III), Fe(II)-O(2), and Fe(II)-CO complexes of the protein displayed autophosphorylation activity, whereas the Fe(II) complex had no significant activity. A H99A mutant lost heme binding ability, suggesting that this residue is the heme proximal ligand. Moreover, His-183 was proposed as the autophosphorylation site based on the finding that the H183A mutant protein was not phosphorylated. The phosphate group of autophosphorylated AfGcHK was transferred to Asp-52 and Asp-169 of a response regulator, as confirmed from site-directed mutagenesis experiments. Based on the amino acid sequences and crystal structures of other globin-coupled oxygen sensor enzymes, Tyr-45 was assumed to be the O(2) binding site at the heme distal side. The O(2) dissociation rate constant, 0.10 s(-1), was substantially increased up to 8.0 s(-1) upon Y45L mutation. The resonance Raman frequencies representing ν(Fe-O2) (559 cm(-1)) and ν(O-O) (1149 cm(-1)) of the Fe(II)-O(2) complex of Y45F mutant AfGcHK were distinct from those of the wild-type protein (ν(Fe-O2), 557 cm(-1); ν(O-O), 1141 cm(-1)), supporting the proposal that Tyr-45 is located at the distal side and forms hydrogen bonds with the oxygen molecule bound to the Fe(II) complex. Thus, we have successfully identified and characterized a novel heme-based globin-coupled oxygen sensor histidine kinase, AfGcHK, in this study.

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Year:  2011        PMID: 21852234      PMCID: PMC3195594          DOI: 10.1074/jbc.M111.274811

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

Review 1.  The mechanism of signal transduction by two-component systems.

Authors:  Patricia Casino; Vicente Rubio; Alberto Marina
Journal:  Curr Opin Struct Biol       Date:  2010-10-13       Impact factor: 6.809

2.  An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control.

Authors:  Jason R Tuckerman; Gonzalo Gonzalez; Eduardo H S Sousa; Xuehua Wan; Jennifer A Saito; Maqsudul Alam; Marie-Alda Gilles-Gonzalez
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

3.  Catalysis and oxygen binding of Ec DOS: a haem-based oxygen-sensor enzyme from Escherichia coli.

Authors:  Kazuo Kobayashi; Atsunari Tanaka; Hiroto Takahashi; Jotaro Igarashi; Yukako Ishitsuka; Nao Yokota; Toru Shimizu
Journal:  J Biochem       Date:  2010-09-21       Impact factor: 3.387

Review 4.  Sensor domains of two-component regulatory systems.

Authors:  Jonah Cheung; Wayne A Hendrickson
Journal:  Curr Opin Microbiol       Date:  2010-03-10       Impact factor: 7.934

Review 5.  Diversity of structure and function of response regulator output domains.

Authors:  Michael Y Galperin
Journal:  Curr Opin Microbiol       Date:  2010-03-11       Impact factor: 7.934

6.  Important roles of Tyr43 at the putative heme distal side in the oxygen recognition and stability of the Fe(II)-O2 complex of YddV, a globin-coupled heme-based oxygen sensor diguanylate cyclase.

Authors:  Kenichi Kitanishi; Kazuo Kobayashi; Yuriko Kawamura; Izumi Ishigami; Takashi Ogura; Kyosuke Nakajima; Jotaro Igarashi; Atsunari Tanaka; Toru Shimizu
Journal:  Biochemistry       Date:  2010-11-19       Impact factor: 3.162

7.  Molecular oxygen regulates the enzymatic activity of a heme-containing diguanylate cyclase (HemDGC) for the synthesis of cyclic di-GMP.

Authors:  Hitomi Sawai; Shiro Yoshioka; Takeshi Uchida; Mamoru Hyodo; Yoshihiro Hayakawa; Koichiro Ishimori; Shigetoshi Aono
Journal:  Biochim Biophys Acta       Date:  2009-10-08

8.  Heme-dependent autophosphorylation of a heme sensor kinase, ChrS, from Corynebacterium diphtheriae reconstituted in proteoliposomes.

Authors:  Yoko Ito; Shoko Nakagawa; Ayako Komagata; Masao Ikeda-Saito; Yoshitsugu Shiro; Hiro Nakamura
Journal:  FEBS Lett       Date:  2009-06-06       Impact factor: 4.124

Review 9.  Single domain response regulators: molecular switches with emerging roles in cell organization and dynamics.

Authors:  Urs Jenal; Michael Y Galperin
Journal:  Curr Opin Microbiol       Date:  2009-02-24       Impact factor: 7.934

Review 10.  Bacterial sensors of oxygen.

Authors:  Jeffrey Green; Jason C Crack; Andrew J Thomson; Nick E LeBrun
Journal:  Curr Opin Microbiol       Date:  2009-02-24       Impact factor: 7.934

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  11 in total

1.  Disruption of the dimerization interface of the sensing domain in the dimeric heme-based oxygen sensor AfGcHK abolishes bacterial signal transduction.

Authors:  Tereza Skalova; Alzbeta Lengalova; Jan Dohnalek; Karl Harlos; Peter Mihalcin; Petr Kolenko; Martin Stranava; Jan Blaha; Toru Shimizu; Markéta Martínková
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

2.  Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction.

Authors:  Martin Stranava; Petr Man; Tereza Skálová; Petr Kolenko; Jan Blaha; Veronika Fojtikova; Václav Martínek; Jan Dohnálek; Alzbeta Lengalova; Michal Rosůlek; Toru Shimizu; Markéta Martínková
Journal:  J Biol Chem       Date:  2017-11-01       Impact factor: 5.157

Review 3.  Heme-based globin-coupled oxygen sensors: linking oxygen binding to functional regulation of diguanylate cyclase, histidine kinase, and methyl-accepting chemotaxis.

Authors:  Markéta Martínková; Kenichi Kitanishi; Toru Shimizu
Journal:  J Biol Chem       Date:  2013-08-08       Impact factor: 5.157

4.  A heme-based redox sensor in the methanogenic archaeon Methanosarcina acetivorans.

Authors:  Bastian Molitor; Marc Stassen; Anuja Modi; Samir F El-Mashtoly; Christoph Laurich; Wolfgang Lubitz; John H Dawson; Michael Rother; Nicole Frankenberg-Dinkel
Journal:  J Biol Chem       Date:  2013-05-09       Impact factor: 5.157

Review 5.  Mechanism and Role of Globin-Coupled Sensor Signalling.

Authors:  Johnnie A Walker; Shannon Rivera; Emily E Weinert
Journal:  Adv Microb Physiol       Date:  2017-07-06       Impact factor: 3.517

Review 6.  The Heme-Based Oxygen-Sensor Phosphodiesterase Ec DOS (DosP): Structure-Function Relationships.

Authors:  Toru Shimizu
Journal:  Biosensors (Basel)       Date:  2013-06-17

7.  An O2-sensing stressosome from a Gram-negative bacterium.

Authors:  Xin Jia; Jian-Bo Wang; Shannon Rivera; Duc Duong; Emily E Weinert
Journal:  Nat Commun       Date:  2016-08-04       Impact factor: 14.919

8.  The importance of conserved amino acids in heme-based globin-coupled diguanylate cyclases.

Authors:  Xuehua Wan; Jennifer A Saito; James S Newhouse; Shaobin Hou; Maqsudul Alam
Journal:  PLoS One       Date:  2017-08-08       Impact factor: 3.240

9.  dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes.

Authors:  Ying Shi; Ying Zhang; Shaofeng Lin; Chenwei Wang; Jiaqi Zhou; Di Peng; Yu Xue
Journal:  Sci Data       Date:  2020-05-29       Impact factor: 6.444

10.  Suppressor mutations reveal an NtrC-like response regulator, NmpR, for modulation of Type-IV Pili-dependent motility in Myxococcus xanthus.

Authors:  Daniel J Bretl; Kayla M Ladd; Samantha N Atkinson; Susanne Müller; John R Kirby
Journal:  PLoS Genet       Date:  2018-10-22       Impact factor: 5.917

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