Literature DB >> 19096849

Distributed parameter identification for a label-structured cell population dynamics model using CFSE histogram time-series data.

Tatyana Luzyanina1, Dirk Roose, Gennady Bocharov.   

Abstract

In this work we address the problem of the robust identification of unknown parameters of a cell population dynamics model from experimental data on the kinetics of cells labelled with a fluorescence marker defining the division age of the cell. The model is formulated by a first order hyperbolic PDE for the distribution of cells with respect to the structure variable x (or z) being the intensity level (or the log(10)-transformed intensity level) of the marker. The parameters of the model are the rate functions of cell division, death, label decay and the label dilution factor. We develop a computational approach to the identification of the model parameters with a particular focus on the cell birth rate alpha(z) as a function of the marker intensity, assuming the other model parameters are scalars to be estimated. To solve the inverse problem numerically, we parameterize alpha(z) and apply a maximum likelihood approach. The parametrization is based on cubic Hermite splines defined on a coarse mesh with either equally spaced a priori fixed nodes or nodes to be determined in the parameter estimation procedure. Ill-posedness of the inverse problem is indicated by multiple minima. To treat the ill-posed problem, we apply Tikhonov regularization with the regularization parameter determined by the discrepancy principle. We show that the solution of the regularized parameter estimation problem is consistent with the data set with an accuracy within the noise level in the measurements.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19096849     DOI: 10.1007/s00285-008-0244-5

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  11 in total

1.  A general mathematical framework to model generation structure in a population of asynchronously dividing cells.

Authors:  Kalet León; Jose Faro; Jorge Carneiro
Journal:  J Theor Biol       Date:  2004-08-21       Impact factor: 2.691

2.  Quantifying cell turnover using CFSE data.

Authors:  Vitaly V Ganusov; Sergei S Pilyugin; Rob J de Boer; Kaja Murali-Krishna; Rafi Ahmed; Rustom Antia
Journal:  J Immunol Methods       Date:  2005-03       Impact factor: 2.303

3.  Quantifying lymphocyte kinetics in vivo using carboxyfluorescein diacetate succinimidyl ester (CFSE).

Authors:  Becca Asquith; Christophe Debacq; Arnaud Florins; Nicolas Gillet; Teresa Sanchez-Alcaraz; Angelina Mosley; Luc Willems
Journal:  Proc Biol Sci       Date:  2006-05-07       Impact factor: 5.349

4.  Computational analysis of CFSE proliferation assay.

Authors:  Tatyana Luzyanina; Sonja Mrusek; John T Edwards; Dirk Roose; Stephan Ehl; Gennady Bocharov
Journal:  J Math Biol       Date:  2006-11-09       Impact factor: 2.259

5.  Monitoring lymphocyte proliferation in vitro and in vivo with the intracellular fluorescent dye carboxyfluorescein diacetate succinimidyl ester.

Authors:  Ben J C Quah; Hilary S Warren; Christopher R Parish
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

6.  Measuring lymphocyte proliferation, survival and differentiation using CFSE time-series data.

Authors:  Edwin D Hawkins; Mirja Hommel; Marian L Turner; Francis L Battye; John F Markham; Philip D Hodgkin
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Cell growth and division. I. A mathematical model with applications to cell volume distributions in mammalian suspension cultures.

Authors:  G I Bell; E C Anderson
Journal:  Biophys J       Date:  1967-07       Impact factor: 4.033

8.  Analysis of cell kinetics using a cell division marker: mathematical modeling of experimental data.

Authors:  Samuel Bernard; Laurent Pujo-Menjouet; Michael C Mackey
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

9.  Estimation of the proliferation and maturation functions in a physiologically structured model of thymocyte development. Function estimation in thymocyte model.

Authors:  Guanyu Wang
Journal:  J Math Biol       Date:  2007-01-09       Impact factor: 2.164

10.  Numerical modelling of label-structured cell population growth using CFSE distribution data.

Authors:  Tatyana Luzyanina; Dirk Roose; Tim Schenkel; Martina Sester; Stephan Ehl; Andreas Meyerhans; Gennady Bocharov
Journal:  Theor Biol Med Model       Date:  2007-07-24       Impact factor: 2.432

View more
  12 in total

1.  Label Structured Cell Proliferation Models.

Authors:  H T Banks; Frédérique Charles; Marie Doumic Jauffret; Karyn L Sutton; W Clayton Thompson
Journal:  Appl Math Lett       Date:  2010-12-01       Impact factor: 4.055

2.  Mathematical models for CFSE labelled lymphocyte dynamics: asymmetry and time-lag in division.

Authors:  Tatyana Luzyanina; Jovana Cupovic; Burkhard Ludewig; Gennady Bocharov
Journal:  J Math Biol       Date:  2013-12-13       Impact factor: 2.259

3.  A new model for the estimation of cell proliferation dynamics using CFSE data.

Authors:  H T Banks; Karyn L Sutton; W Clayton Thompson; Gennady Bocharov; Marie Doumic; Tim Schenkel; Jordi Argilaguet; Sandra Giest; Cristina Peligero; Andreas Meyerhans
Journal:  J Immunol Methods       Date:  2011-08-24       Impact factor: 2.303

Review 4.  Estimation methods for heterogeneous cell population models in systems biology.

Authors:  Steffen Waldherr
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

5.  An Inverse Problem for a Class of Conditional Probability Measure-Dependent Evolution Equations.

Authors:  Inom Mirzaev; Erin C Byrne; David M Bortz
Journal:  Inverse Probl       Date:  2016-07-15       Impact factor: 2.407

6.  Estimation of cell proliferation dynamics using CFSE data.

Authors:  H T Banks; Karyn L Sutton; W Clayton Thompson; Gennady Bocharov; Dirk Roose; Tim Schenkel; Andreas Meyerhans
Journal:  Bull Math Biol       Date:  2010-03-03       Impact factor: 1.758

7.  A mechanistic model for bromodeoxyuridine dilution naturally explains labelling data of self-renewing T cell populations.

Authors:  Vitaly V Ganusov; Rob J De Boer
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

8.  Quantifying CFSE Label Decay in Flow Cytometry Data.

Authors:  H T Banks; A Choi; T Huffman; J Nardini; L Poag; W C Thompson
Journal:  Appl Math Lett       Date:  2013-01-03       Impact factor: 4.055

9.  Identification of models of heterogeneous cell populations from population snapshot data.

Authors:  Jan Hasenauer; Steffen Waldherr; Malgorzata Doszczak; Nicole Radde; Peter Scheurich; Frank Allgöwer
Journal:  BMC Bioinformatics       Date:  2011-04-28       Impact factor: 3.169

10.  A Stochastic Model for CD4+ T Cell Proliferation and Dissemination Network in Primary Immune Response.

Authors:  Alessandro Boianelli; Elena Pettini; Gennaro Prota; Donata Medaglini; Antonio Vicino
Journal:  PLoS One       Date:  2015-08-24       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.