Literature DB >> 19083759

Analysis of 10 X-STRs in three African populations.

Iva Gomes1, Cíntia Alves, Karina Maxzud, Rui Pereira, Maria João Prata, Paula Sánchez-Diz, Angel Carracedo, António Amorim, Leonor Gusmão.   

Abstract

Three African populations were genetically studied through a decaplex X chromosome short tandem repeat (STR) system, which includes the following loci: DXS8378, DXS9898, DXS8377, HPRTB, GATA172D05, DXS7423, DXS6809, DXS7132, DXS101 and DXS6789. A total of 237 unrelated male individuals from Angola, Mozambique and Uganda were typed. DXS8377 revealed to be the most polymorphic marker and in contrast, locus DXS7423 was the least informative in Angola and Mozambique and DXS8378 in Uganda. No significant associations between alleles of any pair of loci were found in these three population groups. The overall mean exclusion chances for the 10-plex in parentage testing, when both mother and daughter are investigated are above 1 in 4.2 million being the highest in Mozambique (1 in 5.3 million); in duos these values are approximately 1 in 60 thousand. Concerning the overall power of discrimination, this decaplex can discriminate 1 in nearly 41 million Ugandan men and 1 in around 30 million Angolan and Mozambican men; raising an order of magnitude of over 13 digits in all population groups for women. All these parameters demonstrate the potential of this decaplex for parentage testing as well as for identification purposes.

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Year:  2007        PMID: 19083759     DOI: 10.1016/j.fsigen.2007.01.001

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  12 in total

1.  Allele frequencies of 11 X-chromosomal loci of two population samples from Africa.

Authors:  Micaela Poetsch; Alexander Knop; Daniela El-Mostaqim; Noel Rakotomavo; Nicole von Wurmb-Schwark
Journal:  Int J Legal Med       Date:  2011-03       Impact factor: 2.686

2.  Genetic profile characterization of 10 X-STRs in four populations of the southeastern region of Brazil.

Authors:  Joyce A Martins; Jeane C Costa; Greiciane G Paneto; Raquel F Figueiredo; Leonor Gusmão; Paula Sánchez-Diz; Angel Carracedo; Regina M B Cicarelli
Journal:  Int J Legal Med       Date:  2010-06-16       Impact factor: 2.686

3.  Nomenclature discrepancies in the HPRTB short tandem repeat.

Authors:  Reinhard Szibor; Jeanett Edelmann; Sandra Hering; Iva Gomes; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2009-01-10       Impact factor: 2.686

4.  A method for the analysis of 32 X chromosome insertion deletion polymorphisms in a single PCR.

Authors:  Rui Pereira; Vânia Pereira; Iva Gomes; Carmen Tomas; Niels Morling; António Amorim; Maria João Prata; Angel Carracedo; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2011-06-30       Impact factor: 2.686

5.  Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure.

Authors:  Joyce A Martins; Denise P Martins; Camila I F Oliveira-Brancati; Juliana Martinez; Regina M B Cicarelli; Dorotéia R S Souza
Journal:  Int J Legal Med       Date:  2017-04-12       Impact factor: 2.686

6.  Genetic profile characterization of ten X-STRs in a sample from Paraná, Brazil.

Authors:  Luciellen d'Avila Giacomel Kobachuk; Marcelo Malaghini; José Samuel da Silva; Leonor Gusmão; Maria da Graça Bicalho
Journal:  Int J Legal Med       Date:  2012-07-20       Impact factor: 2.686

7.  Allele and haplotype diversity of X-chromosomal STRs in Ivory Coast.

Authors:  Serena Pasino; Stefano Caratti; Massimiliano Del Pero; Alfredo Santovito; Carlo Torre; Carlo Robino
Journal:  Int J Legal Med       Date:  2011-06-30       Impact factor: 2.686

8.  Analysis of 21 X-chromosomal STRs in an Algerian population sample.

Authors:  Asmahan Bekada; Soraya Benhamamouch; Abdallah Boudjema; Mustapha Fodil; Silvia Menegon; Carlo Torre; Carlo Robino
Journal:  Int J Legal Med       Date:  2009-12-11       Impact factor: 2.686

9.  X-chromosome STR sequence variation, repeat structure, and nomenclature in humans and chimpanzees.

Authors:  Iva Gomes; Mechthild Prinz; Rui Pereira; Erik Bieschke; Wolfgang R Mayr; António Amorim; Angel Carracedo; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2008-12-12       Impact factor: 2.686

10.  Evaluation of DXS9902, DXS7132, DXS6809, DXS7133, and DXS7423 in humans and chimpanzees: sequence variation, repeat structure, and nomenclature.

Authors:  Iva Gomes; Rui Pereira; Wolfgang R Mayr; António Amorim; Angel Carracedo; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2009-06-18       Impact factor: 2.686

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