Literature DB >> 19079804

Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction.

Magnus Bergh1, Gösta Huldt, Nicusor Tîmneanu, Filipe R N C Maia, Janos Hajdu.   

Abstract

Detailed structural investigations on living cells are problematic because existing structural methods cannot reach high resolutions on non-reproducible objects. Illumination with an ultrashort and extremely bright X-ray pulse can outrun key damage processes over a very short period. This can be exploited to extend the diffraction signal to the highest possible resolution in flash diffraction experiments. Here we present an analysis of the interaction of a very intense and very short X-ray pulse with a living cell, using a non-equilibrium population kinetics plasma code with radiation transfer. Each element in the evolving plasma is modeled by numerous states to monitor changes in the atomic populations as a function of pulse length, wavelength, and fluence. The model treats photoionization, impact ionization, Auger decay, recombination, and inverse bremsstrahlung by solving rate equations in a self-consistent manner and describes hydrodynamic expansion through the ion sound speed. The results show that subnanometer resolutions could be reached on micron-sized cells in a diffraction-limited geometry at wavelengths between 0.75 and 1.5 nm and at fluences of 1011-1012 photons microm-2 in less than 10 fs. Subnanometer resolutions could also be achieved with harder X-rays at higher fluences. We discuss experimental and computational strategies to obtain depth information about the object in flash diffraction experiments.

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Year:  2008        PMID: 19079804     DOI: 10.1017/S003358350800471X

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  24 in total

1.  X-ray imaging beyond the limits.

Authors:  Henry N Chapman
Journal:  Nat Mater       Date:  2009-04       Impact factor: 43.841

2.  Single mimivirus particles intercepted and imaged with an X-ray laser.

Authors:  M Marvin Seibert; Tomas Ekeberg; Filipe R N C Maia; Martin Svenda; Jakob Andreasson; Olof Jönsson; Duško Odić; Bianca Iwan; Andrea Rocker; Daniel Westphal; Max Hantke; Daniel P DePonte; Anton Barty; Joachim Schulz; Lars Gumprecht; Nicola Coppola; Andrew Aquila; Mengning Liang; Thomas A White; Andrew Martin; Carl Caleman; Stephan Stern; Chantal Abergel; Virginie Seltzer; Jean-Michel Claverie; Christoph Bostedt; John D Bozek; Sébastien Boutet; A Alan Miahnahri; Marc Messerschmidt; Jacek Krzywinski; Garth Williams; Keith O Hodgson; Michael J Bogan; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Inger Andersson; Saša Bajt; Miriam Barthelmess; John C H Spence; Petra Fromme; Uwe Weierstall; Richard Kirian; Mark Hunter; R Bruce Doak; Stefano Marchesini; Stefan P Hau-Riege; Matthias Frank; Robert L Shoeman; Lukas Lomb; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Carlo Schmidt; Lutz Foucar; Nils Kimmel; Peter Holl; Benedikt Rudek; Benjamin Erk; André Hömke; Christian Reich; Daniel Pietschner; Georg Weidenspointner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Ilme Schlichting; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; Henry N Chapman; Janos Hajdu
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

3.  Single-particle structure determination by correlations of snapshot X-ray diffraction patterns.

Authors:  D Starodub; A Aquila; S Bajt; M Barthelmess; A Barty; C Bostedt; J D Bozek; N Coppola; R B Doak; S W Epp; B Erk; L Foucar; L Gumprecht; C Y Hampton; A Hartmann; R Hartmann; P Holl; S Kassemeyer; N Kimmel; H Laksmono; M Liang; N D Loh; L Lomb; A V Martin; K Nass; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; R G Sierra; H Soltau; J Steinbrener; F Stellato; S Stern; G Weidenspointner; M Frank; J Ullrich; L Strüder; I Schlichting; H N Chapman; J C H Spence; M J Bogan
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

Review 4.  A minimal view of single-particle imaging with X-ray lasers.

Authors:  N Duane Loh
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

5.  Soft X-ray diffraction microscopy of a frozen hydrated yeast cell.

Authors:  Xiaojing Huang; Johanna Nelson; Janos Kirz; Enju Lima; Stefano Marchesini; Huijie Miao; Aaron M Neiman; David Shapiro; Jan Steinbrener; Andrew Stewart; Joshua J Turner; Chris Jacobsen
Journal:  Phys Rev Lett       Date:  2009-11-05       Impact factor: 9.161

6.  Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements.

Authors:  Anton Barty; Carl Caleman; Andrew Aquila; Nicusor Timneanu; Lukas Lomb; Thomas A White; Jakob Andreasson; David Arnlund; Saša Bajt; Thomas R M Barends; Miriam Barthelmess; Michael J Bogan; Christoph Bostedt; John D Bozek; Ryan Coffee; Nicola Coppola; Jan Davidsson; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Veit Elser; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Petra Fromme; Heinz Graafsma; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Robert Hartmann; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; Mark S Hunter; Linda Johansson; Stephan Kassemeyer; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Erik Malmerberg; Stefano Marchesini; Andrew V Martin; Karol Nass; Richard Neutze; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Howard Scott; Ilme Schlichting; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond G Sierra; Heike Soltau; John C H Spence; Francesco Stellato; Stephan Stern; Lothar Strüder; Joachim Ullrich; X Wang; Georg Weidenspointner; Uwe Weierstall; Cornelia B Wunderer; Henry N Chapman
Journal:  Nat Photonics       Date:  2012       Impact factor: 38.771

7.  Femtosecond X-ray protein nanocrystallography.

Authors:  Henry N Chapman; Petra Fromme; Anton Barty; Thomas A White; Richard A Kirian; Andrew Aquila; Mark S Hunter; Joachim Schulz; Daniel P DePonte; Uwe Weierstall; R Bruce Doak; Filipe R N C Maia; Andrew V Martin; Ilme Schlichting; Lukas Lomb; Nicola Coppola; Robert L Shoeman; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Lutz Foucar; Nils Kimmel; Georg Weidenspointner; Peter Holl; Mengning Liang; Miriam Barthelmess; Carl Caleman; Sébastien Boutet; Michael J Bogan; Jacek Krzywinski; Christoph Bostedt; Saša Bajt; Lars Gumprecht; Benedikt Rudek; Benjamin Erk; Carlo Schmidt; André Hömke; Christian Reich; Daniel Pietschner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Marc Messerschmidt; John D Bozek; Stefan P Hau-Riege; Matthias Frank; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Garth J Williams; Janos Hajdu; Nicusor Timneanu; M Marvin Seibert; Jakob Andreasson; Andrea Rocker; Olof Jönsson; Martin Svenda; Stephan Stern; Karol Nass; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Kevin E Schmidt; Xiaoyu Wang; Ingo Grotjohann; James M Holton; Thomas R M Barends; Richard Neutze; Stefano Marchesini; Raimund Fromme; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Inger Andersson; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; John C H Spence
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

8.  An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy.

Authors:  M R Howells; T Beetz; H N Chapman; C Cui; J M Holton; C J Jacobsen; J Kirz; E Lima; S Marchesini; H Miao; D Sayre; D A Shapiro; J C H Spence; D Starodub
Journal:  J Electron Spectros Relat Phenomena       Date:  2009-03-01       Impact factor: 1.957

9.  Impact of synchrotron radiation on macromolecular crystallography: a personal view.

Authors:  Zbigniew Dauter; Mariusz Jaskolski; Alexander Wlodawer
Journal:  J Synchrotron Radiat       Date:  2010-05-14       Impact factor: 2.616

10.  Three-dimensional coherent X-ray diffractive imaging of whole frozen-hydrated cells.

Authors:  Jose A Rodriguez; Rui Xu; Chien-Chun Chen; Zhifeng Huang; Huaidong Jiang; Allan L Chen; Kevin S Raines; Alan Pryor; Daewoong Nam; Lutz Wiegart; Changyong Song; Anders Madsen; Yuriy Chushkin; Federico Zontone; Peter J Bradley; Jianwei Miao
Journal:  IUCrJ       Date:  2015-08-20       Impact factor: 4.769

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