Literature DB >> 19073939

One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome.

Daniel G Gibson1, Gwynedd A Benders, Kevin C Axelrod, Jayshree Zaveri, Mikkel A Algire, Monzia Moodie, Michael G Montague, J Craig Venter, Hamilton O Smith, Clyde A Hutchison.   

Abstract

We previously reported assembly and cloning of the synthetic Mycoplasma genitalium JCVI-1.0 genome in the yeast Saccharomyces cerevisiae by recombination of six overlapping DNA fragments to produce a 592-kb circle. Here we extend this approach by demonstrating assembly of the synthetic genome from 25 overlapping fragments in a single step. The use of yeast recombination greatly simplifies the assembly of large DNA molecules from both synthetic and natural fragments.

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Year:  2008        PMID: 19073939      PMCID: PMC2600582          DOI: 10.1073/pnas.0811011106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-18       Impact factor: 11.205

2.  Rebuilding microbial genomes.

Authors:  Robert A Holt; Rene Warren; Stephane Flibotte; Perseus I Missirlis; Duane E Smailus
Journal:  Bioessays       Date:  2007-06       Impact factor: 4.345

3.  General method for plasmid construction using homologous recombination.

Authors:  C K Raymond; T A Pownder; S L Sexson
Journal:  Biotechniques       Date:  1999-01       Impact factor: 1.993

4.  Transfer of YACs up to 2.3 Mb intact into human cells with polyethylenimine.

Authors:  P Marschall; N Malik; Z Larin
Journal:  Gene Ther       Date:  1999-09       Impact factor: 5.250

Review 5.  Nonhomologous end joining in yeast.

Authors:  James M Daley; Phillip L Palmbos; Dongliang Wu; Thomas E Wilson
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

6.  Direct cloning of full-length mouse mitochondrial DNA using a Bacillus subtilis genome vector.

Authors:  Izuru Yonemura; Kazuto Nakada; Akitsugu Sato; Jun-Ichi Hayashi; Kyoko Fujita; Shinya Kaneko; Mitsuhiro Itaya
Journal:  Gene       Date:  2007-01-19       Impact factor: 3.688

7.  A model system to assess the integrity of mammalian YACs during transformation and propagation in yeast.

Authors:  N Kouprina; M Eldarov; R Moyzis; M Resnick; V Larionov
Journal:  Genomics       Date:  1994-05-01       Impact factor: 5.736

8.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

Review 9.  Eukaryotic replicators and associated protein complexes.

Authors:  S P Bell
Journal:  Curr Opin Genet Dev       Date:  1995-04       Impact factor: 5.578

10.  Rapid generation of long synthetic tandem repeats and its application for analysis in human artificial chromosome formation.

Authors:  Tom Ebersole; Yasuhide Okamoto; Vladimir N Noskov; Natalay Kouprina; Jung-Hyun Kim; Sun-Hee Leem; J Carl Barrett; Hiroshi Masumoto; Vladimir Larionov
Journal:  Nucleic Acids Res       Date:  2005-09-01       Impact factor: 16.971

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  142 in total

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Authors:  Christina Toft; Siv G E Andersson
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

Review 2.  How to make a minimal genome for synthetic minimal cell.

Authors:  Liu-Yan Zhang; Su-Hua Chang; Jing Wang
Journal:  Protein Cell       Date:  2010-06-04       Impact factor: 14.870

3.  PCRless library mutagenesis via oligonucleotide recombination in yeast.

Authors:  Nathan Pirakitikulr; Nili Ostrov; Pamela Peralta-Yahya; Virginia W Cornish
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

Review 4.  Genome engineering.

Authors:  Peter A Carr; George M Church
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

Review 5.  Protein engineering in designing tailored enzymes and microorganisms for biofuels production.

Authors:  Fei Wen; Nikhil U Nair; Huimin Zhao
Journal:  Curr Opin Biotechnol       Date:  2009-08-05       Impact factor: 9.740

6.  A synthetic genetic edge detection program.

Authors:  Jeffrey J Tabor; Howard M Salis; Zachary Booth Simpson; Aaron A Chevalier; Anselm Levskaya; Edward M Marcotte; Christopher A Voigt; Andrew D Ellington
Journal:  Cell       Date:  2009-06-26       Impact factor: 41.582

7.  Mega-cloning and the advent of synthetic genomes.

Authors:  Lise Goltermann; Thomas Bentin
Journal:  Artif DNA PNA XNA       Date:  2010-07

8.  Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries.

Authors:  Jiayuan Quan; Jingdong Tian
Journal:  Nat Protoc       Date:  2011-02-03       Impact factor: 13.491

9.  A toolkit for DNA assembly, genome engineering and multicolor imaging for C. elegans.

Authors:  Bryan Sands; Nikolay Burnaevskiy; Soo R Yun; Mathew M Crane; Matt Kaeberlein; Alexander Mendenhall
Journal:  Transl Med Aging       Date:  2018-04-13

10.  In-Yeast Assembly of Coronavirus Infectious cDNA Clones Using a Synthetic Genomics Pipeline.

Authors:  Tran Thi Nhu Thao; Fabien Labroussaa; Nadine Ebert; Joerg Jores; Volker Thiel
Journal:  Methods Mol Biol       Date:  2020
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