Literature DB >> 19660930

Protein engineering in designing tailored enzymes and microorganisms for biofuels production.

Fei Wen1, Nikhil U Nair, Huimin Zhao.   

Abstract

Lignocellulosic biofuels represent a sustainable, renewable, and the only foreseeable alternative energy source to transportation fossil fuels. However, the recalcitrant nature of lignocellulose poses technical hurdles to an economically viable biorefinery. Low enzymatic hydrolysis efficiency and low productivity, yield, and titer of biofuels are among the top cost contributors. Protein engineering has been used to improve the performance of lignocellulose-degrading enzymes, as well as proteins involved in biofuel synthesis pathways. Unlike its great success seen in other industrial applications, protein engineering has achieved only modest results in improving the lignocellulose-to-biofuels efficiency. This review will discuss the unique challenges that protein engineering faces in the process of converting lignocellulose to biofuels and how they are addressed by recent advances in this field.

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Year:  2009        PMID: 19660930      PMCID: PMC2763986          DOI: 10.1016/j.copbio.2009.07.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  58 in total

1.  Structure-guided engineering of xylitol dehydrogenase cosubstrate specificity.

Authors:  Andreas H Ehrensberger; Robert A Elling; David K Wilson
Journal:  Structure       Date:  2006-03       Impact factor: 5.006

Review 2.  Catalytic strategies for changing the energy content and achieving C--C coupling in biomass-derived oxygenated hydrocarbons.

Authors:  Dante A Simonetti; James A Dumesic
Journal:  ChemSusChem       Date:  2008       Impact factor: 8.928

3.  A family of thermostable fungal cellulases created by structure-guided recombination.

Authors:  Pete Heinzelman; Christopher D Snow; Indira Wu; Catherine Nguyen; Alan Villalobos; Sridhar Govindarajan; Jeremy Minshull; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

Review 4.  Biofuel alternatives to ethanol: pumping the microbial well.

Authors:  J L Fortman; Swapnil Chhabra; Aindrila Mukhopadhyay; Howard Chou; Taek Soon Lee; Eric Steen; Jay D Keasling
Journal:  Trends Biotechnol       Date:  2008-05-28       Impact factor: 19.536

5.  Engineering of an Escherichia coli strain for the production of 3-methyl-1-butanol.

Authors:  Michael R Connor; James C Liao
Journal:  Appl Environ Microbiol       Date:  2008-08-01       Impact factor: 4.792

6.  The expression in Saccharomyces cerevisiae of a glucose/xylose symporter from Candida intermedia is affected by the presence of a glucose/xylose facilitator.

Authors:  Maria José Leandro; Isabel Spencer-Martins; Paula Gonçalves
Journal:  Microbiology (Reading)       Date:  2008-06       Impact factor: 2.777

7.  Metabolic engineering of Escherichia coli for 1-butanol production.

Authors:  Shota Atsumi; Anthony F Cann; Michael R Connor; Claire R Shen; Kevin M Smith; Mark P Brynildsen; Katherine J Y Chou; Taizo Hanai; James C Liao
Journal:  Metab Eng       Date:  2007-09-14       Impact factor: 9.783

8.  Effect of the reversal of coenzyme specificity by expression of mutated Pichia stipitis xylitol dehydrogenase in recombinant Saccharomyces cerevisiae.

Authors:  J Hou; Y Shen; X P Li; X M Bao
Journal:  Lett Appl Microbiol       Date:  2007-08       Impact factor: 2.858

9.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

10.  Altering the coenzyme preference of xylose reductase to favor utilization of NADH enhances ethanol yield from xylose in a metabolically engineered strain of Saccharomyces cerevisiae.

Authors:  Barbara Petschacher; Bernd Nidetzky
Journal:  Microb Cell Fact       Date:  2008-03-17       Impact factor: 5.328

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  22 in total

1.  Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

Authors:  Zhiwei Chen; Gregory D Friedland; Jose H Pereira; Sonia A Reveco; Rosa Chan; Joshua I Park; Michael P Thelen; Paul D Adams; Adam P Arkin; Jay D Keasling; Harvey W Blanch; Blake A Simmons; Kenneth L Sale; Dylan Chivian; Swapnil R Chhabra
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

2.  Site-directed mutagenesis of a family 42 β-galactosidase from an antarctic bacterium.

Authors:  Matthew V Shumway; Peter P Sheridan
Journal:  Int J Biochem Mol Biol       Date:  2012-05-18

Review 3.  Biocatalyst development by directed evolution.

Authors:  Meng Wang; Tong Si; Huimin Zhao
Journal:  Bioresour Technol       Date:  2012-01-21       Impact factor: 9.642

4.  Determination of the catalytic base in family 48 glycosyl hydrolases.

Authors:  Maxim Kostylev; David B Wilson
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

5.  Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome.

Authors:  Jie Sun; Fei Wen; Tong Si; Jian-He Xu; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

6.  US132 Cyclodextrin Glucanotransferase Engineering by Random Mutagenesis for an Anti-Staling Purpose.

Authors:  Sonia Jemli; Mouna Jaoua; Samir Bejar
Journal:  Mol Biotechnol       Date:  2016-09       Impact factor: 2.695

7.  Yeast surface display of trifunctional minicellulosomes for simultaneous saccharification and fermentation of cellulose to ethanol.

Authors:  Fei Wen; Jie Sun; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

8.  Expression, isolation, and purification of soluble and insoluble biotinylated proteins for nerve tissue regeneration.

Authors:  Aleesha M McCormick; Natalie A Jarmusik; Elizabeth J Endrizzi; Nic D Leipzig
Journal:  J Vis Exp       Date:  2014-01-22       Impact factor: 1.355

9.  Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.

Authors:  Martin Allgaier; Amitha Reddy; Joshua I Park; Natalia Ivanova; Patrik D'haeseleer; Steve Lowry; Rajat Sapra; Terry C Hazen; Blake A Simmons; Jean S VanderGheynst; Philip Hugenholtz
Journal:  PLoS One       Date:  2010-01-21       Impact factor: 3.240

Review 10.  The path to next generation biofuels: successes and challenges in the era of synthetic biology.

Authors:  Clementina Dellomonaco; Fabio Fava; Ramon Gonzalez
Journal:  Microb Cell Fact       Date:  2010-01-20       Impact factor: 5.328

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